miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33619 5' -52.9 NC_007605.1 + 6259 0.71 0.858008
Target:  5'- uUGCCGCAguuggugcgggcUCCACGcCCUcGGGCAUg -3'
miRNA:   3'- gGCGGCGU------------AGGUGCaGGAaCUUGUAg -5'
33619 5' -52.9 NC_007605.1 + 95348 0.66 0.984389
Target:  5'- -aGCCGCcgCCGCGUUUgugGGACu-- -3'
miRNA:   3'- ggCGGCGuaGGUGCAGGaa-CUUGuag -5'
33619 5' -52.9 NC_007605.1 + 76288 0.67 0.964005
Target:  5'- cCCGCUGaaCAUCCucaagauuuGCGUCCU-GAGCcUCa -3'
miRNA:   3'- -GGCGGC--GUAGG---------UGCAGGAaCUUGuAG- -5'
33619 5' -52.9 NC_007605.1 + 118763 0.68 0.960542
Target:  5'- gCCGCCGCcgCCGacUCCUacugGGACAc- -3'
miRNA:   3'- -GGCGGCGuaGGUgcAGGAa---CUUGUag -5'
33619 5' -52.9 NC_007605.1 + 126977 0.68 0.95294
Target:  5'- cCUG-CGCAUCCACGgCCUUGAccugguACAg- -3'
miRNA:   3'- -GGCgGCGUAGGUGCaGGAACU------UGUag -5'
33619 5' -52.9 NC_007605.1 + 69811 0.68 0.939788
Target:  5'- gCGCUcuCGUCCACGUUCaugUUGAACAUg -3'
miRNA:   3'- gGCGGc-GUAGGUGCAGG---AACUUGUAg -5'
33619 5' -52.9 NC_007605.1 + 97742 0.66 0.984389
Target:  5'- -gGCCGCcgUCACGUCCcUGGcCGa- -3'
miRNA:   3'- ggCGGCGuaGGUGCAGGaACUuGUag -5'
33619 5' -52.9 NC_007605.1 + 10616 0.67 0.96725
Target:  5'- -gGCCGCuUCUcCGUCCUggcgGAcaGCGUCc -3'
miRNA:   3'- ggCGGCGuAGGuGCAGGAa---CU--UGUAG- -5'
33619 5' -52.9 NC_007605.1 + 122845 0.68 0.956855
Target:  5'- aCCGCCGCAgagCCGCaGUUg--GAGCAg- -3'
miRNA:   3'- -GGCGGCGUa--GGUG-CAGgaaCUUGUag -5'
33619 5' -52.9 NC_007605.1 + 111076 0.68 0.938355
Target:  5'- cCCGCCGCuUUCugGUCUcgggUGAgacccucucggaggACAUCu -3'
miRNA:   3'- -GGCGGCGuAGGugCAGGa---ACU--------------UGUAG- -5'
33619 5' -52.9 NC_007605.1 + 22176 0.71 0.86567
Target:  5'- aCGCCGCGguaagggCUACGUCCgagucuccgUGGACAc- -3'
miRNA:   3'- gGCGGCGUa------GGUGCAGGa--------ACUUGUag -5'
33619 5' -52.9 NC_007605.1 + 70673 0.69 0.913059
Target:  5'- gCGCUGCA-CCgACGUCCaguUUGGACAccUCa -3'
miRNA:   3'- gGCGGCGUaGG-UGCAGG---AACUUGU--AG- -5'
33619 5' -52.9 NC_007605.1 + 97568 0.67 0.96725
Target:  5'- gCGCCGCAUcuaCCGCGUU----AACAUCu -3'
miRNA:   3'- gGCGGCGUA---GGUGCAGgaacUUGUAG- -5'
33619 5' -52.9 NC_007605.1 + 38371 0.77 0.559058
Target:  5'- gCGCCGCcgCCAgGUCCUgGGGCAg- -3'
miRNA:   3'- gGCGGCGuaGGUgCAGGAaCUUGUag -5'
33619 5' -52.9 NC_007605.1 + 38746 0.77 0.559058
Target:  5'- gCGCCGCcgCCAgGUCCUgGGGCAg- -3'
miRNA:   3'- gGCGGCGuaGGUgCAGGAaCUUGUag -5'
33619 5' -52.9 NC_007605.1 + 107831 0.75 0.641066
Target:  5'- gCCGCCGCucuUCUACGUCCU----CAUCu -3'
miRNA:   3'- -GGCGGCGu--AGGUGCAGGAacuuGUAG- -5'
33619 5' -52.9 NC_007605.1 + 39745 0.77 0.559058
Target:  5'- gCGCCGCcgCCAgGUCCUgGGGCAg- -3'
miRNA:   3'- gGCGGCGuaGGUgCAGGAaCUUGUag -5'
33619 5' -52.9 NC_007605.1 + 39620 0.77 0.559058
Target:  5'- gCGCCGCcgCCAgGUCCUgGGGCAg- -3'
miRNA:   3'- gGCGGCGuaGGUgCAGGAaCUUGUag -5'
33619 5' -52.9 NC_007605.1 + 39495 0.77 0.559058
Target:  5'- gCGCCGCcgCCAgGUCCUgGGGCAg- -3'
miRNA:   3'- gGCGGCGuaGGUgCAGGAaCUUGUag -5'
33619 5' -52.9 NC_007605.1 + 38871 0.77 0.559058
Target:  5'- gCGCCGCcgCCAgGUCCUgGGGCAg- -3'
miRNA:   3'- gGCGGCGuaGGUgCAGGAaCUUGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.