Results 1 - 20 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33620 | 3' | -62.8 | NC_007605.1 | + | 25088 | 0.66 | 0.675325 |
Target: 5'- uGUUGCCC-UCUCCucuaauuGCACCGGccaGUCAg -3' miRNA: 3'- -CGACGGGcAGAGGc------CGUGGCCc--CAGU- -5' |
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33620 | 3' | -62.8 | NC_007605.1 | + | 39241 | 0.66 | 0.665717 |
Target: 5'- cGCUGCgCCGcCgCCagguccuggGGCAgCCGGGGUUc -3' miRNA: 3'- -CGACG-GGCaGaGG---------CCGU-GGCCCCAGu -5' |
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33620 | 3' | -62.8 | NC_007605.1 | + | 39491 | 0.66 | 0.665717 |
Target: 5'- cGCUGCgCCGcCgCCagguccuggGGCAgCCGGGGUUc -3' miRNA: 3'- -CGACG-GGCaGaGG---------CCGU-GGCCCCAGu -5' |
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33620 | 3' | -62.8 | NC_007605.1 | + | 39616 | 0.66 | 0.665717 |
Target: 5'- cGCUGCgCCGcCgCCagguccuggGGCAgCCGGGGUUc -3' miRNA: 3'- -CGACG-GGCaGaGG---------CCGU-GGCCCCAGu -5' |
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33620 | 3' | -62.8 | NC_007605.1 | + | 127431 | 0.66 | 0.634846 |
Target: 5'- cGCUGCCUucgccuGUCUCCcuucGGCcacagccugacuCUGGGGUCu -3' miRNA: 3'- -CGACGGG------CAGAGG----CCGu-----------GGCCCCAGu -5' |
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33620 | 3' | -62.8 | NC_007605.1 | + | 73460 | 0.66 | 0.646437 |
Target: 5'- --aGUCCGUCaUCGGggUCGGGGUCc -3' miRNA: 3'- cgaCGGGCAGaGGCCguGGCCCCAGu -5' |
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33620 | 3' | -62.8 | NC_007605.1 | + | 151127 | 0.66 | 0.655122 |
Target: 5'- gGCgGCCCGUgccccagCUCCGuCACgGGGGgcgCAu -3' miRNA: 3'- -CGaCGGGCA-------GAGGCcGUGgCCCCa--GU- -5' |
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33620 | 3' | -62.8 | NC_007605.1 | + | 76993 | 0.66 | 0.656086 |
Target: 5'- -gUGCCCG-CUCCcGCucCCGGGGa-- -3' miRNA: 3'- cgACGGGCaGAGGcCGu-GGCCCCagu -5' |
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33620 | 3' | -62.8 | NC_007605.1 | + | 38492 | 0.66 | 0.665717 |
Target: 5'- cGCUGCgCCGcCgCCagguccuggGGCAgCCGGGGUUc -3' miRNA: 3'- -CGACG-GGCaGaGG---------CCGU-GGCCCCAGu -5' |
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33620 | 3' | -62.8 | NC_007605.1 | + | 38991 | 0.66 | 0.665717 |
Target: 5'- cGCUGCgCCGcCgCCagguccuggGGCAgCCGGGGUUc -3' miRNA: 3'- -CGACG-GGCaGaGG---------CCGU-GGCCCCAGu -5' |
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33620 | 3' | -62.8 | NC_007605.1 | + | 38742 | 0.66 | 0.665717 |
Target: 5'- cGCUGCgCCGcCgCCagguccuggGGCAgCCGGGGUUc -3' miRNA: 3'- -CGACG-GGCaGaGG---------CCGU-GGCCCCAGu -5' |
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33620 | 3' | -62.8 | NC_007605.1 | + | 38367 | 0.66 | 0.665717 |
Target: 5'- cGCUGCgCCGcCgCCagguccuggGGCAgCCGGGGUUc -3' miRNA: 3'- -CGACG-GGCaGaGG---------CCGU-GGCCCCAGu -5' |
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33620 | 3' | -62.8 | NC_007605.1 | + | 39116 | 0.66 | 0.665717 |
Target: 5'- cGCUGCgCCGcCgCCagguccuggGGCAgCCGGGGUUc -3' miRNA: 3'- -CGACG-GGCaGaGG---------CCGU-GGCCCCAGu -5' |
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33620 | 3' | -62.8 | NC_007605.1 | + | 39942 | 0.66 | 0.624219 |
Target: 5'- uGCUgGCCCGguacgccuggauugCCGGCuggggGCUGGGGUCc -3' miRNA: 3'- -CGA-CGGGCaga-----------GGCCG-----UGGCCCCAGu -5' |
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33620 | 3' | -62.8 | NC_007605.1 | + | 39741 | 0.66 | 0.665717 |
Target: 5'- cGCUGCgCCGcCgCCagguccuggGGCAgCCGGGGUUc -3' miRNA: 3'- -CGACG-GGCaGaGG---------CCGU-GGCCCCAGu -5' |
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33620 | 3' | -62.8 | NC_007605.1 | + | 3792 | 0.66 | 0.665717 |
Target: 5'- aGCUGCuuGUCUCCG-CAaaacCCGGcGGa-- -3' miRNA: 3'- -CGACGggCAGAGGCcGU----GGCC-CCagu -5' |
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33620 | 3' | -62.8 | NC_007605.1 | + | 38867 | 0.66 | 0.665717 |
Target: 5'- cGCUGCgCCGcCgCCagguccuggGGCAgCCGGGGUUc -3' miRNA: 3'- -CGACG-GGCaGaGG---------CCGU-GGCCCCAGu -5' |
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33620 | 3' | -62.8 | NC_007605.1 | + | 39366 | 0.66 | 0.665717 |
Target: 5'- cGCUGCgCCGcCgCCagguccuggGGCAgCCGGGGUUc -3' miRNA: 3'- -CGACG-GGCaGaGG---------CCGU-GGCCCCAGu -5' |
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33620 | 3' | -62.8 | NC_007605.1 | + | 58569 | 0.66 | 0.675325 |
Target: 5'- gGgUGCCCGgggccgcauccUUCUGGCAgUgGGGGUCAa -3' miRNA: 3'- -CgACGGGCa----------GAGGCCGU-GgCCCCAGU- -5' |
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33620 | 3' | -62.8 | NC_007605.1 | + | 142711 | 0.66 | 0.646437 |
Target: 5'- cGCUcCCCG-CUCCGGCGg-GGGGUg- -3' miRNA: 3'- -CGAcGGGCaGAGGCCGUggCCCCAgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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