miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33620 3' -62.8 NC_007605.1 + 142201 0.71 0.392461
Target:  5'- cGCUGcCCCG-CUCCGGCGg-GGGGUg- -3'
miRNA:   3'- -CGAC-GGGCaGAGGCCGUggCCCCAgu -5'
33620 3' -62.8 NC_007605.1 + 141386 0.71 0.392461
Target:  5'- cGCUGcCCCG-CUCCGGCGg-GGGGUg- -3'
miRNA:   3'- -CGAC-GGGCaGAGGCCGUggCCCCAgu -5'
33620 3' -62.8 NC_007605.1 + 141488 0.71 0.392461
Target:  5'- cGCUGcCCCG-CUCCGGCGg-GGGGUg- -3'
miRNA:   3'- -CGAC-GGGCaGAGGCCGUggCCCCAgu -5'
33620 3' -62.8 NC_007605.1 + 141590 0.71 0.392461
Target:  5'- cGCUGcCCCG-CUCCGGCGg-GGGGUg- -3'
miRNA:   3'- -CGAC-GGGCaGAGGCCGUggCCCCAgu -5'
33620 3' -62.8 NC_007605.1 + 141692 0.71 0.392461
Target:  5'- cGCUGcCCCG-CUCCGGCGg-GGGGUg- -3'
miRNA:   3'- -CGAC-GGGCaGAGGCCGUggCCCCAgu -5'
33620 3' -62.8 NC_007605.1 + 141793 0.71 0.392461
Target:  5'- cGCUGcCCCG-CUCCGGCGg-GGGGUg- -3'
miRNA:   3'- -CGAC-GGGCaGAGGCCGUggCCCCAgu -5'
33620 3' -62.8 NC_007605.1 + 141895 0.71 0.392461
Target:  5'- cGCUGcCCCG-CUCCGGCGg-GGGGUg- -3'
miRNA:   3'- -CGAC-GGGCaGAGGCCGUggCCCCAgu -5'
33620 3' -62.8 NC_007605.1 + 141997 0.71 0.392461
Target:  5'- cGCUGcCCCG-CUCCGGCGg-GGGGUg- -3'
miRNA:   3'- -CGAC-GGGCaGAGGCCGUggCCCCAgu -5'
33620 3' -62.8 NC_007605.1 + 142099 0.71 0.392461
Target:  5'- cGCUGcCCCG-CUCCGGCGg-GGGGUg- -3'
miRNA:   3'- -CGAC-GGGCaGAGGCCGUggCCCCAgu -5'
33620 3' -62.8 NC_007605.1 + 141284 0.71 0.392461
Target:  5'- cGCUGcCCCG-CUCCGGCGg-GGGGUg- -3'
miRNA:   3'- -CGAC-GGGCaGAGGCCGUggCCCCAgu -5'
33620 3' -62.8 NC_007605.1 + 141182 0.71 0.392461
Target:  5'- cGCUGcCCCG-CUCCGGCGg-GGGGUg- -3'
miRNA:   3'- -CGAC-GGGCaGAGGCCGUggCCCCAgu -5'
33620 3' -62.8 NC_007605.1 + 141080 0.71 0.392461
Target:  5'- cGCUGcCCCG-CUCCGGCGg-GGGGUg- -3'
miRNA:   3'- -CGAC-GGGCaGAGGCCGUggCCCCAgu -5'
33620 3' -62.8 NC_007605.1 + 123603 0.76 0.176008
Target:  5'- cGC-GCCUGUCUCgCGGgGCCGGGGcCGc -3'
miRNA:   3'- -CGaCGGGCAGAG-GCCgUGGCCCCaGU- -5'
33620 3' -62.8 NC_007605.1 + 62942 0.73 0.279173
Target:  5'- uGCUGCCCc-CUCCGGC-CCGGcGUCu -3'
miRNA:   3'- -CGACGGGcaGAGGCCGuGGCCcCAGu -5'
33620 3' -62.8 NC_007605.1 + 125390 0.72 0.325261
Target:  5'- cGCUGCCCaccUC-CCGGUGCCcaGGGUCAu -3'
miRNA:   3'- -CGACGGGc--AGaGGCCGUGGc-CCCAGU- -5'
33620 3' -62.8 NC_007605.1 + 143118 0.71 0.361505
Target:  5'- cGCUGcCCCG-CUCCGGCggggAUgGGGGUg- -3'
miRNA:   3'- -CGAC-GGGCaGAGGCCG----UGgCCCCAgu -5'
33620 3' -62.8 NC_007605.1 + 140673 0.71 0.392461
Target:  5'- cGCUGcCCCG-CUCCGGCGg-GGGGUg- -3'
miRNA:   3'- -CGAC-GGGCaGAGGCCGUggCCCCAgu -5'
33620 3' -62.8 NC_007605.1 + 140774 0.71 0.392461
Target:  5'- cGCUGcCCCG-CUCCGGCGg-GGGGUg- -3'
miRNA:   3'- -CGAC-GGGCaGAGGCCGUggCCCCAgu -5'
33620 3' -62.8 NC_007605.1 + 140876 0.71 0.392461
Target:  5'- cGCUGcCCCG-CUCCGGCGg-GGGGUg- -3'
miRNA:   3'- -CGAC-GGGCaGAGGCCGUggCCCCAgu -5'
33620 3' -62.8 NC_007605.1 + 140978 0.71 0.392461
Target:  5'- cGCUGcCCCG-CUCCGGCGg-GGGGUg- -3'
miRNA:   3'- -CGAC-GGGCaGAGGCCGUggCCCCAgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.