Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33620 | 5' | -52.1 | NC_007605.1 | + | 124933 | 0.68 | 0.943537 |
Target: 5'- aUCUGUCCgUGGCGcAGCUuCAcGGUGc -3' miRNA: 3'- -AGACAGGgACCGUuUUGAcGU-CCAUc -5' |
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33620 | 5' | -52.1 | NC_007605.1 | + | 136505 | 0.66 | 0.982666 |
Target: 5'- ----cCCCUGGaCGGGACUG-GGGUGGa -3' miRNA: 3'- agacaGGGACC-GUUUUGACgUCCAUC- -5' |
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33620 | 5' | -52.1 | NC_007605.1 | + | 142643 | 0.66 | 0.982666 |
Target: 5'- ----cCCCUGGaCGGGACUG-GGGUGGa -3' miRNA: 3'- agacaGGGACC-GUUUUGACgUCCAUC- -5' |
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33620 | 5' | -52.1 | NC_007605.1 | + | 101008 | 0.66 | 0.98796 |
Target: 5'- cUCUGUCuCUUGGCAGcauaUGCGGcaGUAGc -3' miRNA: 3'- -AGACAG-GGACCGUUuug-ACGUC--CAUC- -5' |
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33620 | 5' | -52.1 | NC_007605.1 | + | 139749 | 0.67 | 0.970201 |
Target: 5'- gCUGgcgCCCUugccuggaGGCAGAgacugggcgGCUGCAGGgGGg -3' miRNA: 3'- aGACa--GGGA--------CCGUUU---------UGACGUCCaUC- -5' |
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33620 | 5' | -52.1 | NC_007605.1 | + | 142818 | 0.67 | 0.970201 |
Target: 5'- gCUGgcgCCCUugccuggaGGCAGAgacugggcgGCUGCAGGgGGg -3' miRNA: 3'- aGACa--GGGA--------CCGUUU---------UGACGUCCaUC- -5' |
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33620 | 5' | -52.1 | NC_007605.1 | + | 97753 | 0.76 | 0.587979 |
Target: 5'- --cGUCCCUGGCcGAGCUGgGGG-AGg -3' miRNA: 3'- agaCAGGGACCGuUUUGACgUCCaUC- -5' |
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33620 | 5' | -52.1 | NC_007605.1 | + | 69706 | 0.71 | 0.853918 |
Target: 5'- gUCUGUCCCUGGaCGuAGGCguacuuucccUGCAGGa-- -3' miRNA: 3'- -AGACAGGGACC-GU-UUUG----------ACGUCCauc -5' |
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33620 | 5' | -52.1 | NC_007605.1 | + | 45762 | 0.7 | 0.891416 |
Target: 5'- gUCUGUCCCcGGCcuugcACUGCuGGaUGGa -3' miRNA: 3'- -AGACAGGGaCCGuuu--UGACGuCC-AUC- -5' |
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33620 | 5' | -52.1 | NC_007605.1 | + | 119806 | 0.66 | 0.981424 |
Target: 5'- uUCcgGUCCCUGGUggagaccaucucgcuGAAuuuuCUGCAGGa-- -3' miRNA: 3'- -AGa-CAGGGACCG---------------UUUu---GACGUCCauc -5' |
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33620 | 5' | -52.1 | NC_007605.1 | + | 155094 | 0.67 | 0.970201 |
Target: 5'- gCUGgcgCCCUugccuggaGGCAGAgacugggcgGCUGCAGGgGGg -3' miRNA: 3'- aGACa--GGGA--------CCGUUU---------UGACGUCCaUC- -5' |
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33620 | 5' | -52.1 | NC_007605.1 | + | 152025 | 0.67 | 0.970201 |
Target: 5'- gCUGgcgCCCUugccuggaGGCAGAgacugggcgGCUGCAGGgGGg -3' miRNA: 3'- aGACa--GGGA--------CCGUUU---------UGACGUCCaUC- -5' |
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33620 | 5' | -52.1 | NC_007605.1 | + | 63771 | 0.67 | 0.967089 |
Target: 5'- cUCUGUCuCCUGGUuGAcCUGgAGGaAGa -3' miRNA: 3'- -AGACAG-GGACCGuUUuGACgUCCaUC- -5' |
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33620 | 5' | -52.1 | NC_007605.1 | + | 158163 | 0.67 | 0.970201 |
Target: 5'- gCUGgcgCCCUugccuggaGGCAGAgacugggcgGCUGCAGGgGGg -3' miRNA: 3'- aGACa--GGGA--------CCGUUU---------UGACGUCCaUC- -5' |
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33620 | 5' | -52.1 | NC_007605.1 | + | 112926 | 0.67 | 0.96836 |
Target: 5'- uUCaGUCCCUGGCcGAGgucCUGCacggcaguuacaacgGGGUGGc -3' miRNA: 3'- -AGaCAGGGACCGuUUU---GACG---------------UCCAUC- -5' |
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33620 | 5' | -52.1 | NC_007605.1 | + | 148956 | 0.67 | 0.970201 |
Target: 5'- gCUGgcgCCCUugccuggaGGCAGAgacugggcgGCUGCAGGgGGg -3' miRNA: 3'- aGACa--GGGA--------CCGUUU---------UGACGUCCaUC- -5' |
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33620 | 5' | -52.1 | NC_007605.1 | + | 38607 | 0.66 | 0.978269 |
Target: 5'- -gUGUCCCUgGGCAGucggGCGGGg-- -3' miRNA: 3'- agACAGGGA-CCGUUuugaCGUCCauc -5' |
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33620 | 5' | -52.1 | NC_007605.1 | + | 139574 | 0.66 | 0.982666 |
Target: 5'- ----cCCCUGGaCGGGACUG-GGGUGGa -3' miRNA: 3'- agacaGGGACC-GUUUUGACgUCCAUC- -5' |
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33620 | 5' | -52.1 | NC_007605.1 | + | 136681 | 0.67 | 0.970201 |
Target: 5'- gCUGgcgCCCUugccuggaGGCAGAgacugggcgGCUGCAGGgGGg -3' miRNA: 3'- aGACa--GGGA--------CCGUUU---------UGACGUCCaUC- -5' |
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33620 | 5' | -52.1 | NC_007605.1 | + | 145887 | 0.67 | 0.970201 |
Target: 5'- gCUGgcgCCCUugccuggaGGCAGAgacugggcgGCUGCAGGgGGg -3' miRNA: 3'- aGACa--GGGA--------CCGUUU---------UGACGUCCaUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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