Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33621 | 3' | -58.9 | NC_007605.1 | + | 150344 | 0.66 | 0.748391 |
Target: 5'- gACGgggagggGGGGaGGCUGGGgUGGCAg---- -3' miRNA: 3'- -UGCa------CCCC-CCGGUCCgACCGUaauau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 153413 | 0.66 | 0.748391 |
Target: 5'- gACGgggagggGGGGaGGCUGGGgUGGCAg---- -3' miRNA: 3'- -UGCa------CCCC-CCGGUCCgACCGUaauau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 156482 | 0.66 | 0.748391 |
Target: 5'- gACGgggagggGGGGaGGCUGGGgUGGCAg---- -3' miRNA: 3'- -UGCa------CCCC-CCGGUCCgACCGUaauau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 159551 | 0.66 | 0.748391 |
Target: 5'- gACGgggagggGGGGaGGCUGGGgUGGCAg---- -3' miRNA: 3'- -UGCa------CCCC-CCGGUCCgACCGUaauau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 141715 | 0.66 | 0.76736 |
Target: 5'- uACGggGGGcccGGGCCGGGUUGGUc----- -3' miRNA: 3'- -UGCa-CCC---CCCGGUCCGACCGuaauau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 11850 | 0.66 | 0.794901 |
Target: 5'- ---cGGGGGGCCugcgaggaGGcGCUGGCGg---- -3' miRNA: 3'- ugcaCCCCCCGG--------UC-CGACCGUaauau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 157869 | 0.67 | 0.729019 |
Target: 5'- gGCGcccGGGGGUCGGGCUGGg------ -3' miRNA: 3'- -UGCac-CCCCCGGUCCGACCguaauau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 154800 | 0.67 | 0.729019 |
Target: 5'- gGCGcccGGGGGUCGGGCUGGg------ -3' miRNA: 3'- -UGCac-CCCCCGGUCCGACCguaauau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 64703 | 0.72 | 0.443467 |
Target: 5'- aGCGUGGGggucaggugguGGGCCAGGUUGuaAUUGg- -3' miRNA: 3'- -UGCACCC-----------CCCGGUCCGACcgUAAUau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 38301 | 0.7 | 0.518558 |
Target: 5'- gAUG-GGGaGGGCgGGGCUGGCGc---- -3' miRNA: 3'- -UGCaCCC-CCCGgUCCGACCGUaauau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 128846 | 0.7 | 0.548025 |
Target: 5'- -aGU-GGGGGCCGGGUcauUGGCAUg--- -3' miRNA: 3'- ugCAcCCCCCGGUCCG---ACCGUAauau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 162919 | 0.68 | 0.669209 |
Target: 5'- ---cGGGGGGuUCAGuGgUGGCAUUGUGc -3' miRNA: 3'- ugcaCCCCCC-GGUC-CgACCGUAAUAU- -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 61060 | 0.67 | 0.719205 |
Target: 5'- cAUGUGGGGcauGGgUAGGCUGGUccugacugAUUAUGg -3' miRNA: 3'- -UGCACCCC---CCgGUCCGACCG--------UAAUAU- -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 136387 | 0.67 | 0.729019 |
Target: 5'- gGCGcccGGGGGUCGGGCUGGg------ -3' miRNA: 3'- -UGCac-CCCCCGGUCCGACCguaauau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 139456 | 0.67 | 0.729019 |
Target: 5'- gGCGcccGGGGGUCGGGCUGGg------ -3' miRNA: 3'- -UGCac-CCCCCGGUCCGACCguaauau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 142525 | 0.67 | 0.729019 |
Target: 5'- gGCGcccGGGGGUCGGGCUGGg------ -3' miRNA: 3'- -UGCac-CCCCCGGUCCGACCguaauau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 145594 | 0.67 | 0.729019 |
Target: 5'- gGCGcccGGGGGUCGGGCUGGg------ -3' miRNA: 3'- -UGCac-CCCCCGGUCCGACCguaauau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 148663 | 0.67 | 0.729019 |
Target: 5'- gGCGcccGGGGGUCGGGCUGGg------ -3' miRNA: 3'- -UGCac-CCCCCGGUCCGACCguaauau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 151731 | 0.67 | 0.729019 |
Target: 5'- gGCGcccGGGGGUCGGGCUGGg------ -3' miRNA: 3'- -UGCac-CCCCCGGUCCGACCguaauau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 34976 | 0.66 | 0.794901 |
Target: 5'- cACGgguggaGGGGGGCCaaagAGGCccGGCAa---- -3' miRNA: 3'- -UGCa-----CCCCCCGG----UCCGa-CCGUaauau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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