miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33621 3' -58.9 NC_007605.1 + 163157 1.06 0.00227
Target:  5'- cACGUGGGGGGCCAGGCUGGCAUUAUAu -3'
miRNA:   3'- -UGCACCCCCCGGUCCGACCGUAAUAU- -5'
33621 3' -58.9 NC_007605.1 + 161545 0.67 0.709317
Target:  5'- uACGUGGGGGuagucaCGGGCgGGCAc---- -3'
miRNA:   3'- -UGCACCCCCcg----GUCCGaCCGUaauau -5'
33621 3' -58.9 NC_007605.1 + 74376 0.68 0.679302
Target:  5'- cACGUGGuggaGGGGCgAGGCguugUGGCAc---- -3'
miRNA:   3'- -UGCACC----CCCCGgUCCG----ACCGUaauau -5'
33621 3' -58.9 NC_007605.1 + 3890 0.68 0.679302
Target:  5'- ---aGGGaGGGaaCCAGGCUGGCAa---- -3'
miRNA:   3'- ugcaCCC-CCC--GGUCCGACCGUaauau -5'
33621 3' -58.9 NC_007605.1 + 33906 0.69 0.618463
Target:  5'- -aGUGGGGccggucGGCUGGGCUGGCc----- -3'
miRNA:   3'- ugCACCCC------CCGGUCCGACCGuaauau -5'
33621 3' -58.9 NC_007605.1 + 30837 0.69 0.618463
Target:  5'- -aGUGGGGccggucGGCUGGGCUGGCc----- -3'
miRNA:   3'- ugCACCCC------CCGGUCCGACCGuaauau -5'
33621 3' -58.9 NC_007605.1 + 27768 0.69 0.618463
Target:  5'- -aGUGGGGccggucGGCUGGGCUGGCc----- -3'
miRNA:   3'- ugCACCCC------CCGGUCCGACCGuaauau -5'
33621 3' -58.9 NC_007605.1 + 24699 0.69 0.618463
Target:  5'- -aGUGGGGccggucGGCUGGGCUGGCc----- -3'
miRNA:   3'- ugCACCCC------CCGGUCCGACCGuaauau -5'
33621 3' -58.9 NC_007605.1 + 21630 0.69 0.618463
Target:  5'- -aGUGGGGccggucGGCUGGGCUGGCc----- -3'
miRNA:   3'- ugCACCCC------CCGGUCCGACCGuaauau -5'
33621 3' -58.9 NC_007605.1 + 91333 0.73 0.358903
Target:  5'- -aGUGGcuGGGGCaccgGGGCUGGCGUUAg- -3'
miRNA:   3'- ugCACC--CCCCGg---UCCGACCGUAAUau -5'
33621 3' -58.9 NC_007605.1 + 51680 0.72 0.443467
Target:  5'- -gGUGGGGGGCCuGGCcuccuuagguuUGGCGg---- -3'
miRNA:   3'- ugCACCCCCCGGuCCG-----------ACCGUaauau -5'
33621 3' -58.9 NC_007605.1 + 157375 0.7 0.538139
Target:  5'- cCGUGGGGGGCaCcGGUguggUGGCGUUc-- -3'
miRNA:   3'- uGCACCCCCCG-GuCCG----ACCGUAAuau -5'
33621 3' -58.9 NC_007605.1 + 12423 0.69 0.618463
Target:  5'- -aGUGGGGccggucGGCUGGGCUGGCc----- -3'
miRNA:   3'- ugCACCCC------CCGGUCCGACCGuaauau -5'
33621 3' -58.9 NC_007605.1 + 15492 0.69 0.618463
Target:  5'- -aGUGGGGccggucGGCUGGGCUGGCc----- -3'
miRNA:   3'- ugCACCCC------CCGGUCCGACCGuaauau -5'
33621 3' -58.9 NC_007605.1 + 18561 0.69 0.618463
Target:  5'- -aGUGGGGccggucGGCUGGGCUGGCc----- -3'
miRNA:   3'- ugCACCCC------CCGGUCCGACCGuaauau -5'
33621 3' -58.9 NC_007605.1 + 34976 0.66 0.794901
Target:  5'- cACGgguggaGGGGGGCCaaagAGGCccGGCAa---- -3'
miRNA:   3'- -UGCa-----CCCCCCGG----UCCGa-CCGUaauau -5'
33621 3' -58.9 NC_007605.1 + 38301 0.7 0.518558
Target:  5'- gAUG-GGGaGGGCgGGGCUGGCGc---- -3'
miRNA:   3'- -UGCaCCC-CCCGgUCCGACCGUaauau -5'
33621 3' -58.9 NC_007605.1 + 128846 0.7 0.548025
Target:  5'- -aGU-GGGGGCCGGGUcauUGGCAUg--- -3'
miRNA:   3'- ugCAcCCCCCGGUCCG---ACCGUAauau -5'
33621 3' -58.9 NC_007605.1 + 162919 0.68 0.669209
Target:  5'- ---cGGGGGGuUCAGuGgUGGCAUUGUGc -3'
miRNA:   3'- ugcaCCCCCC-GGUC-CgACCGUAAUAU- -5'
33621 3' -58.9 NC_007605.1 + 61060 0.67 0.719205
Target:  5'- cAUGUGGGGcauGGgUAGGCUGGUccugacugAUUAUGg -3'
miRNA:   3'- -UGCACCCC---CCgGUCCGACCG--------UAAUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.