Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33621 | 3' | -58.9 | NC_007605.1 | + | 163157 | 1.06 | 0.00227 |
Target: 5'- cACGUGGGGGGCCAGGCUGGCAUUAUAu -3' miRNA: 3'- -UGCACCCCCCGGUCCGACCGUAAUAU- -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 91333 | 0.73 | 0.358903 |
Target: 5'- -aGUGGcuGGGGCaccgGGGCUGGCGUUAg- -3' miRNA: 3'- ugCACC--CCCCGg---UCCGACCGUAAUau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 51680 | 0.72 | 0.443467 |
Target: 5'- -gGUGGGGGGCCuGGCcuccuuagguuUGGCGg---- -3' miRNA: 3'- ugCACCCCCCGGuCCG-----------ACCGUaauau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 64703 | 0.72 | 0.443467 |
Target: 5'- aGCGUGGGggucaggugguGGGCCAGGUUGuaAUUGg- -3' miRNA: 3'- -UGCACCC-----------CCCGGUCCGACcgUAAUau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 38301 | 0.7 | 0.518558 |
Target: 5'- gAUG-GGGaGGGCgGGGCUGGCGc---- -3' miRNA: 3'- -UGCaCCC-CCCGgUCCGACCGUaauau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 157375 | 0.7 | 0.538139 |
Target: 5'- cCGUGGGGGGCaCcGGUguggUGGCGUUc-- -3' miRNA: 3'- uGCACCCCCCG-GuCCG----ACCGUAAuau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 128846 | 0.7 | 0.548025 |
Target: 5'- -aGU-GGGGGCCGGGUcauUGGCAUg--- -3' miRNA: 3'- ugCAcCCCCCGGUCCG---ACCGUAauau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 33906 | 0.69 | 0.618463 |
Target: 5'- -aGUGGGGccggucGGCUGGGCUGGCc----- -3' miRNA: 3'- ugCACCCC------CCGGUCCGACCGuaauau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 30837 | 0.69 | 0.618463 |
Target: 5'- -aGUGGGGccggucGGCUGGGCUGGCc----- -3' miRNA: 3'- ugCACCCC------CCGGUCCGACCGuaauau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 27768 | 0.69 | 0.618463 |
Target: 5'- -aGUGGGGccggucGGCUGGGCUGGCc----- -3' miRNA: 3'- ugCACCCC------CCGGUCCGACCGuaauau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 24699 | 0.69 | 0.618463 |
Target: 5'- -aGUGGGGccggucGGCUGGGCUGGCc----- -3' miRNA: 3'- ugCACCCC------CCGGUCCGACCGuaauau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 12423 | 0.69 | 0.618463 |
Target: 5'- -aGUGGGGccggucGGCUGGGCUGGCc----- -3' miRNA: 3'- ugCACCCC------CCGGUCCGACCGuaauau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 15492 | 0.69 | 0.618463 |
Target: 5'- -aGUGGGGccggucGGCUGGGCUGGCc----- -3' miRNA: 3'- ugCACCCC------CCGGUCCGACCGuaauau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 18561 | 0.69 | 0.618463 |
Target: 5'- -aGUGGGGccggucGGCUGGGCUGGCc----- -3' miRNA: 3'- ugCACCCC------CCGGUCCGACCGuaauau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 21630 | 0.69 | 0.618463 |
Target: 5'- -aGUGGGGccggucGGCUGGGCUGGCc----- -3' miRNA: 3'- ugCACCCC------CCGGUCCGACCGuaauau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 162919 | 0.68 | 0.669209 |
Target: 5'- ---cGGGGGGuUCAGuGgUGGCAUUGUGc -3' miRNA: 3'- ugcaCCCCCC-GGUC-CgACCGUAAUAU- -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 74376 | 0.68 | 0.679302 |
Target: 5'- cACGUGGuggaGGGGCgAGGCguugUGGCAc---- -3' miRNA: 3'- -UGCACC----CCCCGgUCCG----ACCGUaauau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 3890 | 0.68 | 0.679302 |
Target: 5'- ---aGGGaGGGaaCCAGGCUGGCAa---- -3' miRNA: 3'- ugcaCCC-CCC--GGUCCGACCGUaauau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 161545 | 0.67 | 0.709317 |
Target: 5'- uACGUGGGGGuagucaCGGGCgGGCAc---- -3' miRNA: 3'- -UGCACCCCCcg----GUCCGaCCGUaauau -5' |
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33621 | 3' | -58.9 | NC_007605.1 | + | 61060 | 0.67 | 0.719205 |
Target: 5'- cAUGUGGGGcauGGgUAGGCUGGUccugacugAUUAUGg -3' miRNA: 3'- -UGCACCCC---CCgGUCCGACCG--------UAAUAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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