miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33622 3' -60.1 NC_007605.1 + 132199 0.71 0.485887
Target:  5'- cUCUCCCcagacaguccGGUCggaGCCAUcaaGGGGGGCCa -3'
miRNA:   3'- -GGAGGGa---------CCAGag-CGGUG---UCUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 150977 0.71 0.507968
Target:  5'- aCUCCUUGuuagguugauagaauGUCgguaccaCGCCACGGGGGGCg -3'
miRNA:   3'- gGAGGGAC---------------CAGa------GCGGUGUCUCCCGg -5'
33622 3' -60.1 NC_007605.1 + 78088 0.71 0.513555
Target:  5'- gCCaUCCUGGgauauuaUCcaGCUGCAGAGGGCCu -3'
miRNA:   3'- -GGaGGGACCag-----AG--CGGUGUCUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 34761 0.71 0.522922
Target:  5'- gCCUCCCcgGGUCcaccagGCCAgcCGGAGGGaCCc -3'
miRNA:   3'- -GGAGGGa-CCAGag----CGGU--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 31692 0.71 0.522922
Target:  5'- gCCUCCCcgGGUCcaccagGCCAgcCGGAGGGaCCc -3'
miRNA:   3'- -GGAGGGa-CCAGag----CGGU--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 28623 0.71 0.522922
Target:  5'- gCCUCCCcgGGUCcaccagGCCAgcCGGAGGGaCCc -3'
miRNA:   3'- -GGAGGGa-CCAGag----CGGU--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 25554 0.71 0.522922
Target:  5'- gCCUCCCcgGGUCcaccagGCCAgcCGGAGGGaCCc -3'
miRNA:   3'- -GGAGGGa-CCAGag----CGGU--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 16347 0.71 0.522922
Target:  5'- gCCUCCCcgGGUCcaccagGCCAgcCGGAGGGaCCc -3'
miRNA:   3'- -GGAGGGa-CCAGag----CGGU--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 13278 0.71 0.522922
Target:  5'- gCCUCCCcgGGUCcaccagGCCAgcCGGAGGGaCCc -3'
miRNA:   3'- -GGAGGGa-CCAGag----CGGU--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 19416 0.71 0.522922
Target:  5'- gCCUCCCcgGGUCcaccagGCCAgcCGGAGGGaCCc -3'
miRNA:   3'- -GGAGGGa-CCAGag----CGGU--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 22485 0.71 0.522922
Target:  5'- gCCUCCCcgGGUCcaccagGCCAgcCGGAGGGaCCc -3'
miRNA:   3'- -GGAGGGa-CCAGag----CGGU--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 4960 0.7 0.540894
Target:  5'- aCgUUCCUcgacaaguacgugGGUCUgGCCACGGAggaguucaugGGGCCa -3'
miRNA:   3'- -GgAGGGA-------------CCAGAgCGGUGUCU----------CCCGG- -5'
33622 3' -60.1 NC_007605.1 + 61 0.7 0.560992
Target:  5'- gCCcCCCgggGGUCUUuCCugGG-GGGCCu -3'
miRNA:   3'- -GGaGGGa--CCAGAGcGGugUCuCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 1659 0.7 0.560992
Target:  5'- gCCcCCCgggGGUCUUuCCugGG-GGGCCu -3'
miRNA:   3'- -GGaGGGa--CCAGAGcGGugUCuCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 599 0.7 0.560992
Target:  5'- gCCcCCCgggGGUCUUuCCugGG-GGGCCu -3'
miRNA:   3'- -GGaGGGa--CCAGAGcGGugUCuCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 123576 0.7 0.571603
Target:  5'- gCCUCCUguguugcagggaguaGGUCUCGCgccugucuCGCGGggccGGGGCCg -3'
miRNA:   3'- -GGAGGGa--------------CCAGAGCG--------GUGUC----UCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 59570 0.7 0.57935
Target:  5'- aCCUCCCUGGUgccugaagacccaCUC-CCuuGGAuguGGGCCc -3'
miRNA:   3'- -GGAGGGACCA-------------GAGcGGugUCU---CCCGG- -5'
33622 3' -60.1 NC_007605.1 + 104743 0.7 0.57935
Target:  5'- gUCUgCCUcgGGUCUCGCCGCuAGuugguccAGGGUCc -3'
miRNA:   3'- -GGAgGGA--CCAGAGCGGUG-UC-------UCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 107082 0.69 0.590037
Target:  5'- aCCUCUCggccugGGUCUCG--GCAGuGGGCUc -3'
miRNA:   3'- -GGAGGGa-----CCAGAGCggUGUCuCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 105978 0.69 0.593932
Target:  5'- aUCUUCCUGGUgUgaaGuCCaaucagacuacugguGCAGAGGGCCg -3'
miRNA:   3'- -GGAGGGACCAgAg--C-GG---------------UGUCUCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.