Results 41 - 60 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33622 | 3' | -60.1 | NC_007605.1 | + | 87749 | 0.67 | 0.725954 |
Target: 5'- gCCUCCUgccguggGGcCUCcuGCCGC--GGGGCCu -3' miRNA: 3'- -GGAGGGa------CCaGAG--CGGUGucUCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 68939 | 0.67 | 0.716474 |
Target: 5'- uCCUCUggacgCUGGUaccCGCCAagcacgcgguGAGGGCCg -3' miRNA: 3'- -GGAGG-----GACCAga-GCGGUgu--------CUCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 165786 | 0.67 | 0.716474 |
Target: 5'- uCCgCCCaGGUCUUGCCAauuGGGGUg -3' miRNA: 3'- -GGaGGGaCCAGAGCGGUgucUCCCGg -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 50598 | 0.67 | 0.715522 |
Target: 5'- uUCUCCCgGGUCgaaCGCUggaguaGCGGAGGcugcugcGCCg -3' miRNA: 3'- -GGAGGGaCCAGa--GCGG------UGUCUCC-------CGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 31802 | 0.67 | 0.706927 |
Target: 5'- gCCUCCCcaccgGGUCcaUCagGCCGgcCGGAGGGaCCc -3' miRNA: 3'- -GGAGGGa----CCAG--AG--CGGU--GUCUCCC-GG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 34871 | 0.67 | 0.706927 |
Target: 5'- gCCUCCCcaccgGGUCcaUCagGCCGgcCGGAGGGaCCc -3' miRNA: 3'- -GGAGGGa----CCAG--AG--CGGU--GUCUCCC-GG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 13388 | 0.67 | 0.706927 |
Target: 5'- gCCUCCCcaccgGGUCcaUCagGCCGgcCGGAGGGaCCc -3' miRNA: 3'- -GGAGGGa----CCAG--AG--CGGU--GUCUCCC-GG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 28733 | 0.67 | 0.706927 |
Target: 5'- gCCUCCCcaccgGGUCcaUCagGCCGgcCGGAGGGaCCc -3' miRNA: 3'- -GGAGGGa----CCAG--AG--CGGU--GUCUCCC-GG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 25664 | 0.67 | 0.706927 |
Target: 5'- gCCUCCCcaccgGGUCcaUCagGCCGgcCGGAGGGaCCc -3' miRNA: 3'- -GGAGGGa----CCAG--AG--CGGU--GUCUCCC-GG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 22595 | 0.67 | 0.706927 |
Target: 5'- gCCUCCCcaccgGGUCcaUCagGCCGgcCGGAGGGaCCc -3' miRNA: 3'- -GGAGGGa----CCAG--AG--CGGU--GUCUCCC-GG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 19526 | 0.67 | 0.706927 |
Target: 5'- gCCUCCCcaccgGGUCcaUCagGCCGgcCGGAGGGaCCc -3' miRNA: 3'- -GGAGGGa----CCAG--AG--CGGU--GUCUCCC-GG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 16457 | 0.67 | 0.706927 |
Target: 5'- gCCUCCCcaccgGGUCcaUCagGCCGgcCGGAGGGaCCc -3' miRNA: 3'- -GGAGGGa----CCAG--AG--CGGU--GUCUCCC-GG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 13149 | 0.68 | 0.684764 |
Target: 5'- -gUCCCUcGUUUgGCacgcgggagaaucaCACGGAGGGCCu -3' miRNA: 3'- ggAGGGAcCAGAgCG--------------GUGUCUCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 45586 | 0.68 | 0.684764 |
Target: 5'- cCCUCCCUGGcuUCUgGaCCGCAGcGGagacagcuccugguGCCc -3' miRNA: 3'- -GGAGGGACC--AGAgC-GGUGUCuCC--------------CGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 61214 | 0.68 | 0.683795 |
Target: 5'- uCUUCCCUG--CUCGCCggggaguaggggggGCuuacaggGGAGGGCCg -3' miRNA: 3'- -GGAGGGACcaGAGCGG--------------UG-------UCUCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 131335 | 0.68 | 0.681856 |
Target: 5'- gCCgggcCCCUGGUggCUCgGCCGCGGuccucccccgugaacGGGGCg -3' miRNA: 3'- -GGa---GGGACCA--GAG-CGGUGUC---------------UCCCGg -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 156219 | 0.68 | 0.681856 |
Target: 5'- -gUCCCUGGcugccugcaaugcucUgCUgGCCACuGAGGGUCc -3' miRNA: 3'- ggAGGGACC---------------A-GAgCGGUGuCUCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 37297 | 0.68 | 0.668242 |
Target: 5'- --gCCUgggGGUCUgcCGCCACcGuGGGCCu -3' miRNA: 3'- ggaGGGa--CCAGA--GCGGUGuCuCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 11806 | 0.68 | 0.658484 |
Target: 5'- gCCUCUCUGcccuGUUugcccgggagcgUCGCCuggcccugguGCGGGGGGCCu -3' miRNA: 3'- -GGAGGGAC----CAG------------AGCGG----------UGUCUCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 60464 | 0.69 | 0.638918 |
Target: 5'- cCCUCCC-GGUCUCuGCgucgUACAGGagcGGGCg -3' miRNA: 3'- -GGAGGGaCCAGAG-CG----GUGUCU---CCCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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