Results 21 - 40 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33622 | 3' | -60.1 | NC_007605.1 | + | 17175 | 0.67 | 0.753918 |
Target: 5'- cCCaugCCCUcGGcCUCugaccgggacgGCUAcCAGGGGGCCa -3' miRNA: 3'- -GGa--GGGA-CCaGAG-----------CGGU-GUCUCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 17544 | 0.77 | 0.247089 |
Target: 5'- cCCUCCCUcGUCUUGCCcuGCGcccGGGGCCa -3' miRNA: 3'- -GGAGGGAcCAGAGCGG--UGUc--UCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 17721 | 0.69 | 0.613462 |
Target: 5'- cCCUCCCcGGa--CGCCugGgcgccccucaaccccGAGGGCCa -3' miRNA: 3'- -GGAGGGaCCagaGCGGugU---------------CUCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 18256 | 0.66 | 0.763053 |
Target: 5'- uCCUCCCccGGUC---CC-CAGuAGGGCCg -3' miRNA: 3'- -GGAGGGa-CCAGagcGGuGUC-UCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 19124 | 0.72 | 0.441437 |
Target: 5'- gCCUCCCcgGGUCccagGCCAgcCGGAGGGaCCc -3' miRNA: 3'- -GGAGGGa-CCAGag--CGGU--GUCUCCC-GG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 19416 | 0.71 | 0.522922 |
Target: 5'- gCCUCCCcgGGUCcaccagGCCAgcCGGAGGGaCCc -3' miRNA: 3'- -GGAGGGa-CCAGag----CGGU--GUCUCCC-GG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 19526 | 0.67 | 0.706927 |
Target: 5'- gCCUCCCcaccgGGUCcaUCagGCCGgcCGGAGGGaCCc -3' miRNA: 3'- -GGAGGGa----CCAG--AG--CGGU--GUCUCCC-GG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 20613 | 0.77 | 0.247089 |
Target: 5'- cCCUCCCUcGUCUUGCCcuGCGcccGGGGCCa -3' miRNA: 3'- -GGAGGGAcCAGAGCGG--UGUc--UCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 21325 | 0.66 | 0.763053 |
Target: 5'- uCCUCCCccGGUC---CC-CAGuAGGGCCg -3' miRNA: 3'- -GGAGGGa-CCAGagcGGuGUC-UCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 22193 | 0.72 | 0.441437 |
Target: 5'- gCCUCCCcgGGUCccagGCCAgcCGGAGGGaCCc -3' miRNA: 3'- -GGAGGGa-CCAGag--CGGU--GUCUCCC-GG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 22201 | 0.66 | 0.789789 |
Target: 5'- gUCUCCgUGGaCaCGCCggaccugaaACgAGAGGGCCc -3' miRNA: 3'- -GGAGGgACCaGaGCGG---------UG-UCUCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 22485 | 0.71 | 0.522922 |
Target: 5'- gCCUCCCcgGGUCcaccagGCCAgcCGGAGGGaCCc -3' miRNA: 3'- -GGAGGGa-CCAGag----CGGU--GUCUCCC-GG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 22595 | 0.67 | 0.706927 |
Target: 5'- gCCUCCCcaccgGGUCcaUCagGCCGgcCGGAGGGaCCc -3' miRNA: 3'- -GGAGGGa----CCAG--AG--CGGU--GUCUCCC-GG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 23682 | 0.77 | 0.247089 |
Target: 5'- cCCUCCCUcGUCUUGCCcuGCGcccGGGGCCa -3' miRNA: 3'- -GGAGGGAcCAGAGCGG--UGUc--UCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 24166 | 0.66 | 0.763053 |
Target: 5'- cCCUCCUUaGGa--UGCCACAauaaAGGGCCa -3' miRNA: 3'- -GGAGGGA-CCagaGCGGUGUc---UCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 24394 | 0.66 | 0.763053 |
Target: 5'- uCCUCCCccGGUC---CC-CAGuAGGGCCg -3' miRNA: 3'- -GGAGGGa-CCAGagcGGuGUC-UCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 25262 | 0.72 | 0.441437 |
Target: 5'- gCCUCCCcgGGUCccagGCCAgcCGGAGGGaCCc -3' miRNA: 3'- -GGAGGGa-CCAGag--CGGU--GUCUCCC-GG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 25554 | 0.71 | 0.522922 |
Target: 5'- gCCUCCCcgGGUCcaccagGCCAgcCGGAGGGaCCc -3' miRNA: 3'- -GGAGGGa-CCAGag----CGGU--GUCUCCC-GG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 25664 | 0.67 | 0.706927 |
Target: 5'- gCCUCCCcaccgGGUCcaUCagGCCGgcCGGAGGGaCCc -3' miRNA: 3'- -GGAGGGa----CCAG--AG--CGGU--GUCUCCC-GG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 26751 | 0.77 | 0.247089 |
Target: 5'- cCCUCCCUcGUCUUGCCcuGCGcccGGGGCCa -3' miRNA: 3'- -GGAGGGAcCAGAGCGG--UGUc--UCCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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