miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33622 3' -60.1 NC_007605.1 + 61 0.7 0.560992
Target:  5'- gCCcCCCgggGGUCUUuCCugGG-GGGCCu -3'
miRNA:   3'- -GGaGGGa--CCAGAGcGGugUCuCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 599 0.7 0.560992
Target:  5'- gCCcCCCgggGGUCUUuCCugGG-GGGCCu -3'
miRNA:   3'- -GGaGGGa--CCAGAGcGGugUCuCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 720 0.69 0.599782
Target:  5'- uCgUCCuCUGGcUCUCuUCGcCAGGGGGCCu -3'
miRNA:   3'- -GgAGG-GACC-AGAGcGGU-GUCUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 1659 0.7 0.560992
Target:  5'- gCCcCCCgggGGUCUUuCCugGG-GGGCCu -3'
miRNA:   3'- -GGaGGGa--CCAGAGcGGugUCuCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 3981 0.67 0.725954
Target:  5'- aUCUacaCCUGGUCcgCGCCggGCAGAcaacucGGCCg -3'
miRNA:   3'- -GGAg--GGACCAGa-GCGG--UGUCUc-----CCGG- -5'
33622 3' -60.1 NC_007605.1 + 4960 0.7 0.540894
Target:  5'- aCgUUCCUcgacaaguacgugGGUCUgGCCACGGAggaguucaugGGGCCa -3'
miRNA:   3'- -GgAGGGA-------------CCAGAgCGGUGUCU----------CCCGG- -5'
33622 3' -60.1 NC_007605.1 + 8852 0.66 0.806976
Target:  5'- -gUCCCaUGuG-CUCGCUcuGC-GAGGGCCg -3'
miRNA:   3'- ggAGGG-AC-CaGAGCGG--UGuCUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 9965 0.66 0.789789
Target:  5'- gCCUggcaaCCUGGUCcuuaCGCCaaGCAGAGGcucaacaacGCCa -3'
miRNA:   3'- -GGAg----GGACCAGa---GCGG--UGUCUCC---------CGG- -5'
33622 3' -60.1 NC_007605.1 + 11806 0.68 0.658484
Target:  5'- gCCUCUCUGcccuGUUugcccgggagcgUCGCCuggcccugguGCGGGGGGCCu -3'
miRNA:   3'- -GGAGGGAC----CAG------------AGCGG----------UGUCUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 11910 0.67 0.753918
Target:  5'- gCUCCC-GGg---GCCACGGAGcGGCUc -3'
miRNA:   3'- gGAGGGaCCagagCGGUGUCUC-CCGG- -5'
33622 3' -60.1 NC_007605.1 + 12118 0.66 0.763053
Target:  5'- uCCUCCCccGGUC---CC-CAGuAGGGCCg -3'
miRNA:   3'- -GGAGGGa-CCAGagcGGuGUC-UCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 12986 0.72 0.441437
Target:  5'- gCCUCCCcgGGUCccagGCCAgcCGGAGGGaCCc -3'
miRNA:   3'- -GGAGGGa-CCAGag--CGGU--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 13149 0.68 0.684764
Target:  5'- -gUCCCUcGUUUgGCacgcgggagaaucaCACGGAGGGCCu -3'
miRNA:   3'- ggAGGGAcCAGAgCG--------------GUGUCUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 13278 0.71 0.522922
Target:  5'- gCCUCCCcgGGUCcaccagGCCAgcCGGAGGGaCCc -3'
miRNA:   3'- -GGAGGGa-CCAGag----CGGU--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 13388 0.67 0.706927
Target:  5'- gCCUCCCcaccgGGUCcaUCagGCCGgcCGGAGGGaCCc -3'
miRNA:   3'- -GGAGGGa----CCAG--AG--CGGU--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 14475 0.77 0.247089
Target:  5'- cCCUCCCUcGUCUUGCCcuGCGcccGGGGCCa -3'
miRNA:   3'- -GGAGGGAcCAGAGCGG--UGUc--UCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 15187 0.66 0.763053
Target:  5'- uCCUCCCccGGUC---CC-CAGuAGGGCCg -3'
miRNA:   3'- -GGAGGGa-CCAGagcGGuGUC-UCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 16055 0.72 0.441437
Target:  5'- gCCUCCCcgGGUCccagGCCAgcCGGAGGGaCCc -3'
miRNA:   3'- -GGAGGGa-CCAGag--CGGU--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 16347 0.71 0.522922
Target:  5'- gCCUCCCcgGGUCcaccagGCCAgcCGGAGGGaCCc -3'
miRNA:   3'- -GGAGGGa-CCAGag----CGGU--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 16457 0.67 0.706927
Target:  5'- gCCUCCCcaccgGGUCcaUCagGCCGgcCGGAGGGaCCc -3'
miRNA:   3'- -GGAGGGa----CCAG--AG--CGGU--GUCUCCC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.