miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33622 3' -60.1 NC_007605.1 + 13278 0.71 0.522922
Target:  5'- gCCUCCCcgGGUCcaccagGCCAgcCGGAGGGaCCc -3'
miRNA:   3'- -GGAGGGa-CCAGag----CGGU--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 22193 0.72 0.441437
Target:  5'- gCCUCCCcgGGUCccagGCCAgcCGGAGGGaCCc -3'
miRNA:   3'- -GGAGGGa-CCAGag--CGGU--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 25262 0.72 0.441437
Target:  5'- gCCUCCCcgGGUCccagGCCAgcCGGAGGGaCCc -3'
miRNA:   3'- -GGAGGGa-CCAGag--CGGU--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 28331 0.72 0.441437
Target:  5'- gCCUCCCcgGGUCccagGCCAgcCGGAGGGaCCc -3'
miRNA:   3'- -GGAGGGa-CCAGag--CGGU--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 31400 0.72 0.441437
Target:  5'- gCCUCCCcgGGUCccagGCCAgcCGGAGGGaCCc -3'
miRNA:   3'- -GGAGGGa-CCAGag--CGGU--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 34469 0.72 0.441437
Target:  5'- gCCUCCCcgGGUCccagGCCAgcCGGAGGGaCCc -3'
miRNA:   3'- -GGAGGGa-CCAGag--CGGU--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 150884 0.72 0.450146
Target:  5'- cCCagCCUGGUCa-GCCGCAGAGGaaGCa -3'
miRNA:   3'- -GGagGGACCAGagCGGUGUCUCC--CGg -5'
33622 3' -60.1 NC_007605.1 + 132199 0.71 0.485887
Target:  5'- cUCUCCCcagacaguccGGUCggaGCCAUcaaGGGGGGCCa -3'
miRNA:   3'- -GGAGGGa---------CCAGag-CGGUG---UCUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 150977 0.71 0.507968
Target:  5'- aCUCCUUGuuagguugauagaauGUCgguaccaCGCCACGGGGGGCg -3'
miRNA:   3'- gGAGGGAC---------------CAGa------GCGGUGUCUCCCGg -5'
33622 3' -60.1 NC_007605.1 + 19124 0.72 0.441437
Target:  5'- gCCUCCCcgGGUCccagGCCAgcCGGAGGGaCCc -3'
miRNA:   3'- -GGAGGGa-CCAGag--CGGU--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 16055 0.72 0.441437
Target:  5'- gCCUCCCcgGGUCccagGCCAgcCGGAGGGaCCc -3'
miRNA:   3'- -GGAGGGa-CCAGag--CGGU--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 12986 0.72 0.441437
Target:  5'- gCCUCCCcgGGUCccagGCCAgcCGGAGGGaCCc -3'
miRNA:   3'- -GGAGGGa-CCAGag--CGGU--GUCUCCC-GG- -5'
33622 3' -60.1 NC_007605.1 + 97382 0.78 0.213359
Target:  5'- gCCUCCCUGGUuuccacCUaugguggaaggggcUGCCGCGGAGGGUg -3'
miRNA:   3'- -GGAGGGACCA------GA--------------GCGGUGUCUCCCGg -5'
33622 3' -60.1 NC_007605.1 + 14475 0.77 0.247089
Target:  5'- cCCUCCCUcGUCUUGCCcuGCGcccGGGGCCa -3'
miRNA:   3'- -GGAGGGAcCAGAGCGG--UGUc--UCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 17544 0.77 0.247089
Target:  5'- cCCUCCCUcGUCUUGCCcuGCGcccGGGGCCa -3'
miRNA:   3'- -GGAGGGAcCAGAGCGG--UGUc--UCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 20613 0.77 0.247089
Target:  5'- cCCUCCCUcGUCUUGCCcuGCGcccGGGGCCa -3'
miRNA:   3'- -GGAGGGAcCAGAGCGG--UGUc--UCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 23682 0.77 0.247089
Target:  5'- cCCUCCCUcGUCUUGCCcuGCGcccGGGGCCa -3'
miRNA:   3'- -GGAGGGAcCAGAGCGG--UGUc--UCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 26751 0.77 0.247089
Target:  5'- cCCUCCCUcGUCUUGCCcuGCGcccGGGGCCa -3'
miRNA:   3'- -GGAGGGAcCAGAGCGG--UGUc--UCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 29820 0.77 0.247089
Target:  5'- cCCUCCCUcGUCUUGCCcuGCGcccGGGGCCa -3'
miRNA:   3'- -GGAGGGAcCAGAGCGG--UGUc--UCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 32889 0.77 0.247089
Target:  5'- cCCUCCCUcGUCUUGCCcuGCGcccGGGGCCa -3'
miRNA:   3'- -GGAGGGAcCAGAGCGG--UGUc--UCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.