Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33623 | 5' | -60.6 | NC_007605.1 | + | 164013 | 1.1 | 0.001197 |
Target: 5'- gGCCCGCGUAGCCGGUCCCCAGUGUGGc -3' miRNA: 3'- -CGGGCGCAUCGGCCAGGGGUCACACC- -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 59120 | 0.72 | 0.416343 |
Target: 5'- uUCCGCGcacggGGCCGGuUCCCCGG-GUGc -3' miRNA: 3'- cGGGCGCa----UCGGCC-AGGGGUCaCACc -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 83234 | 0.71 | 0.467951 |
Target: 5'- aGCCCGUG-GGCCGGcggcuccugguaUCCCUGGUaUGGa -3' miRNA: 3'- -CGGGCGCaUCGGCC------------AGGGGUCAcACC- -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 39598 | 0.7 | 0.53202 |
Target: 5'- aGCCC-CGUAGCCGGgaguguggCCCCAGc---- -3' miRNA: 3'- -CGGGcGCAUCGGCCa-------GGGGUCacacc -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 169068 | 0.69 | 0.570033 |
Target: 5'- uGUuuGUGUuagaaaAGCgGGUCCCCGGggggcaagcUGUGGg -3' miRNA: 3'- -CGggCGCA------UCGgCCAGGGGUC---------ACACC- -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 8864 | 0.69 | 0.589297 |
Target: 5'- cGCuCUGCGagGGCCGGgCCCCGgccGUGUGc -3' miRNA: 3'- -CG-GGCGCa-UCGGCCaGGGGU---CACACc -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 158175 | 0.69 | 0.608674 |
Target: 5'- cCCCGU-UGGCCaGGcCCCCGGUG-GGc -3' miRNA: 3'- cGGGCGcAUCGG-CCaGGGGUCACaCC- -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 127157 | 0.68 | 0.628114 |
Target: 5'- gGCCUcggcgcauaGCGUgaAGUCGGUgUCCAgGUGUGGa -3' miRNA: 3'- -CGGG---------CGCA--UCGGCCAgGGGU-CACACC- -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 98200 | 0.68 | 0.657277 |
Target: 5'- gGCCUG---GGCCGGg-CUCAGUGUGGa -3' miRNA: 3'- -CGGGCgcaUCGGCCagGGGUCACACC- -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 91922 | 0.68 | 0.666971 |
Target: 5'- cUCCGaGUAGCgGG-CCUCGGUGUGa -3' miRNA: 3'- cGGGCgCAUCGgCCaGGGGUCACACc -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 83311 | 0.67 | 0.733692 |
Target: 5'- aGCCUGgGgGGCCGGcggcuccugguaUCCCUGGUaUGGa -3' miRNA: 3'- -CGGGCgCaUCGGCC------------AGGGGUCAcACC- -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 110189 | 0.66 | 0.746655 |
Target: 5'- cGCCCGCc--GCCGc-CCCCgccgcgacggcugugGGUGUGGg -3' miRNA: 3'- -CGGGCGcauCGGCcaGGGG---------------UCACACC- -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 11822 | 0.66 | 0.752157 |
Target: 5'- uGCCCgggaGCGUcGCCuGG-CCCUGGUGcGGg -3' miRNA: 3'- -CGGG----CGCAuCGG-CCaGGGGUCACaCC- -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 39533 | 0.66 | 0.76125 |
Target: 5'- cGCuCCGgGggcAGCCGGgcggCCgCCGGUG-GGu -3' miRNA: 3'- -CG-GGCgCa--UCGGCCa---GG-GGUCACaCC- -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 39408 | 0.66 | 0.76125 |
Target: 5'- cGCuCCGgGggcAGCCGGgcggCCgCCGGUG-GGu -3' miRNA: 3'- -CG-GGCgCa--UCGGCCa---GG-GGUCACaCC- -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 39283 | 0.66 | 0.76125 |
Target: 5'- cGCuCCGgGggcAGCCGGgcggCCgCCGGUG-GGu -3' miRNA: 3'- -CG-GGCgCa--UCGGCCa---GG-GGUCACaCC- -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 39158 | 0.66 | 0.76125 |
Target: 5'- cGCuCCGgGggcAGCCGGgcggCCgCCGGUG-GGu -3' miRNA: 3'- -CG-GGCgCa--UCGGCCa---GG-GGUCACaCC- -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 38784 | 0.66 | 0.76125 |
Target: 5'- cGCuCCGgGggcAGCCGGgcggCCgCCGGUG-GGu -3' miRNA: 3'- -CG-GGCgCa--UCGGCCa---GG-GGUCACaCC- -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 38409 | 0.66 | 0.76125 |
Target: 5'- cGCuCCGgGggcAGCCGGgcggCCgCCGGUG-GGu -3' miRNA: 3'- -CG-GGCgCa--UCGGCCa---GG-GGUCACaCC- -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 39033 | 0.66 | 0.76125 |
Target: 5'- cGCuCCGgGggcAGCCGGgcggCCgCCGGUG-GGu -3' miRNA: 3'- -CG-GGCgCa--UCGGCCa---GG-GGUCACaCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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