Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33623 | 5' | -60.6 | NC_007605.1 | + | 164013 | 1.1 | 0.001197 |
Target: 5'- gGCCCGCGUAGCCGGUCCCCAGUGUGGc -3' miRNA: 3'- -CGGGCGCAUCGGCCAGGGGUCACACC- -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 39283 | 0.66 | 0.76125 |
Target: 5'- cGCuCCGgGggcAGCCGGgcggCCgCCGGUG-GGu -3' miRNA: 3'- -CG-GGCgCa--UCGGCCa---GG-GGUCACaCC- -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 39408 | 0.66 | 0.76125 |
Target: 5'- cGCuCCGgGggcAGCCGGgcggCCgCCGGUG-GGu -3' miRNA: 3'- -CG-GGCgCa--UCGGCCa---GG-GGUCACaCC- -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 39533 | 0.66 | 0.76125 |
Target: 5'- cGCuCCGgGggcAGCCGGgcggCCgCCGGUG-GGu -3' miRNA: 3'- -CG-GGCgCa--UCGGCCa---GG-GGUCACaCC- -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 39658 | 0.66 | 0.76125 |
Target: 5'- cGCuCCGgGggcAGCCGGgcggCCgCCGGUG-GGu -3' miRNA: 3'- -CG-GGCgCa--UCGGCCa---GG-GGUCACaCC- -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 50535 | 0.66 | 0.76125 |
Target: 5'- cGCCgggGCGgccaAGCCGGaCCCCAGggcggGUGc -3' miRNA: 3'- -CGGg--CGCa---UCGGCCaGGGGUCa----CACc -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 115346 | 0.66 | 0.779118 |
Target: 5'- aGCCCcagGCaaagGGCCGGaCuCCCAGcGUGGc -3' miRNA: 3'- -CGGG---CGca--UCGGCCaG-GGGUCaCACC- -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 33899 | 0.66 | 0.782636 |
Target: 5'- cGCCCGgaGUggGGCCGGUCggcugggcuggccggCCCGGgucUGGg -3' miRNA: 3'- -CGGGCg-CA--UCGGCCAG---------------GGGUCac-ACC- -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 136556 | 0.66 | 0.79651 |
Target: 5'- gGCCCGCG-GGCgGGgaCCCGG-GUGc -3' miRNA: 3'- -CGGGCGCaUCGgCCagGGGUCaCACc -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 39158 | 0.66 | 0.76125 |
Target: 5'- cGCuCCGgGggcAGCCGGgcggCCgCCGGUG-GGu -3' miRNA: 3'- -CG-GGCgCa--UCGGCCa---GG-GGUCACaCC- -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 39033 | 0.66 | 0.76125 |
Target: 5'- cGCuCCGgGggcAGCCGGgcggCCgCCGGUG-GGu -3' miRNA: 3'- -CG-GGCgCa--UCGGCCa---GG-GGUCACaCC- -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 38784 | 0.66 | 0.76125 |
Target: 5'- cGCuCCGgGggcAGCCGGgcggCCgCCGGUG-GGu -3' miRNA: 3'- -CG-GGCgCa--UCGGCCa---GG-GGUCACaCC- -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 59120 | 0.72 | 0.416343 |
Target: 5'- uUCCGCGcacggGGCCGGuUCCCCGG-GUGc -3' miRNA: 3'- cGGGCGCa----UCGGCC-AGGGGUCaCACc -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 169068 | 0.69 | 0.570033 |
Target: 5'- uGUuuGUGUuagaaaAGCgGGUCCCCGGggggcaagcUGUGGg -3' miRNA: 3'- -CGggCGCA------UCGgCCAGGGGUC---------ACACC- -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 158175 | 0.69 | 0.608674 |
Target: 5'- cCCCGU-UGGCCaGGcCCCCGGUG-GGc -3' miRNA: 3'- cGGGCGcAUCGG-CCaGGGGUCACaCC- -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 91922 | 0.68 | 0.666971 |
Target: 5'- cUCCGaGUAGCgGG-CCUCGGUGUGa -3' miRNA: 3'- cGGGCgCAUCGgCCaGGGGUCACACc -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 38284 | 0.66 | 0.76125 |
Target: 5'- cGCuCCGgGggcAGCCGGgcggCCgCCGGUG-GGu -3' miRNA: 3'- -CG-GGCgCa--UCGGCCa---GG-GGUCACaCC- -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 38409 | 0.66 | 0.76125 |
Target: 5'- cGCuCCGgGggcAGCCGGgcggCCgCCGGUG-GGu -3' miRNA: 3'- -CG-GGCgCa--UCGGCCa---GG-GGUCACaCC- -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 38534 | 0.66 | 0.76125 |
Target: 5'- cGCuCCGgGggcAGCCGGgcggCCgCCGGUG-GGu -3' miRNA: 3'- -CG-GGCgCa--UCGGCCa---GG-GGUCACaCC- -5' |
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33623 | 5' | -60.6 | NC_007605.1 | + | 38659 | 0.66 | 0.76125 |
Target: 5'- cGCuCCGgGggcAGCCGGgcggCCgCCGGUG-GGu -3' miRNA: 3'- -CG-GGCgCa--UCGGCCa---GG-GGUCACaCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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