miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33624 3' -52.6 NC_007605.1 + 156643 0.73 0.743252
Target:  5'- --gUCuCUGGAGGAcgGGgacGGAGGGGGCc -3'
miRNA:   3'- guaAG-GACCUUUU--UCa--CCUCCCCCGc -5'
33624 3' -52.6 NC_007605.1 + 153574 0.73 0.743252
Target:  5'- --gUCuCUGGAGGAcgGGgacGGAGGGGGCc -3'
miRNA:   3'- guaAG-GACCUUUU--UCa--CCUCCCCCGc -5'
33624 3' -52.6 NC_007605.1 + 147436 0.73 0.743252
Target:  5'- --gUCuCUGGAGGAcgGGgacGGAGGGGGCc -3'
miRNA:   3'- guaAG-GACCUUUU--UCa--CCUCCCCCGc -5'
33624 3' -52.6 NC_007605.1 + 150505 0.73 0.743252
Target:  5'- --gUCuCUGGAGGAcgGGgacGGAGGGGGCc -3'
miRNA:   3'- guaAG-GACCUUUU--UCa--CCUCCCCCGc -5'
33624 3' -52.6 NC_007605.1 + 141298 0.73 0.743252
Target:  5'- --gUCuCUGGAGGAcgGGgacGGAGGGGGCc -3'
miRNA:   3'- guaAG-GACCUUUU--UCa--CCUCCCCCGc -5'
33624 3' -52.6 NC_007605.1 + 109479 0.73 0.752117
Target:  5'- cCAUggCCgUGGAGcuGGUGGAgcacaguGGGGGCGg -3'
miRNA:   3'- -GUAa-GG-ACCUUuuUCACCU-------CCCCCGC- -5'
33624 3' -52.6 NC_007605.1 + 170163 0.73 0.753097
Target:  5'- aCGUUCCgGGGAucGGgggGGucGGGGGGCGc -3'
miRNA:   3'- -GUAAGGaCCUUuuUCa--CC--UCCCCCGC- -5'
33624 3' -52.6 NC_007605.1 + 171223 0.73 0.753097
Target:  5'- aCGUUCCgGGGAucGGgggGGucGGGGGGCGc -3'
miRNA:   3'- -GUAAGGaCCUUuuUCa--CC--UCCCCCGC- -5'
33624 3' -52.6 NC_007605.1 + 170685 0.73 0.753097
Target:  5'- aCGUUCCgGGGAucGGgggGGucGGGGGGCGc -3'
miRNA:   3'- -GUAAGGaCCUUuuUCa--CC--UCCCCCGC- -5'
33624 3' -52.6 NC_007605.1 + 169626 0.73 0.753097
Target:  5'- aCGUUCCgGGGAucGGgggGGucGGGGGGCGc -3'
miRNA:   3'- -GUAAGGaCCUUuuUCa--CC--UCCCCCGC- -5'
33624 3' -52.6 NC_007605.1 + 47403 0.73 0.762831
Target:  5'- ---aCCgccaaggggGGAGAGccAGUGGGGGGGGUGu -3'
miRNA:   3'- guaaGGa--------CCUUUU--UCACCUCCCCCGC- -5'
33624 3' -52.6 NC_007605.1 + 135260 0.73 0.772444
Target:  5'- -----gUGGggGugguGGUGGGGGGGGUGg -3'
miRNA:   3'- guaaggACCuuUu---UCACCUCCCCCGC- -5'
33624 3' -52.6 NC_007605.1 + 72328 0.73 0.772444
Target:  5'- ----aUUGGGAcuugAAGGUGGAgGGGGGCGg -3'
miRNA:   3'- guaagGACCUU----UUUCACCU-CCCCCGC- -5'
33624 3' -52.6 NC_007605.1 + 39794 0.72 0.809503
Target:  5'- ---aCCUGGAAugcAG-GGuGGGGGCGu -3'
miRNA:   3'- guaaGGACCUUuu-UCaCCuCCCCCGC- -5'
33624 3' -52.6 NC_007605.1 + 18359 0.72 0.809503
Target:  5'- ---cCCaaGGggGGAGUGaAGGGGGCGa -3'
miRNA:   3'- guaaGGa-CCuuUUUCACcUCCCCCGC- -5'
33624 3' -52.6 NC_007605.1 + 57509 0.71 0.835576
Target:  5'- ------aGGAAGAAGUGGAGaaggagccGGGGCGg -3'
miRNA:   3'- guaaggaCCUUUUUCACCUC--------CCCCGC- -5'
33624 3' -52.6 NC_007605.1 + 57458 0.71 0.835576
Target:  5'- ------aGGAAGAAGUGGAGaaggagccGGGGCGg -3'
miRNA:   3'- guaaggaCCUUUUUCACCUC--------CCCCGC- -5'
33624 3' -52.6 NC_007605.1 + 51173 0.71 0.843894
Target:  5'- gGggCCUGG-GAGAGUGauGGGGGCGg -3'
miRNA:   3'- gUaaGGACCuUUUUCACcuCCCCCGC- -5'
33624 3' -52.6 NC_007605.1 + 15156 0.71 0.859923
Target:  5'- --aUUCUGGuccuGGUGGcGGGGGUGg -3'
miRNA:   3'- guaAGGACCuuuuUCACCuCCCCCGC- -5'
33624 3' -52.6 NC_007605.1 + 22897 0.71 0.859923
Target:  5'- ---aCCaGGGAGGccugGGAGGGGGCGa -3'
miRNA:   3'- guaaGGaCCUUUUuca-CCUCCCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.