miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33624 3' -52.6 NC_007605.1 + 169485 1.08 0.007147
Target:  5'- gCAUUCCUGGAAAAAGUGGAGGGGGCGu -3'
miRNA:   3'- -GUAAGGACCUUUUUCACCUCCCCCGC- -5'
33624 3' -52.6 NC_007605.1 + 170022 1.08 0.007147
Target:  5'- gCAUUCCUGGAAAAAGUGGAGGGGGCGu -3'
miRNA:   3'- -GUAAGGACCUUUUUCACCUCCCCCGC- -5'
33624 3' -52.6 NC_007605.1 + 170545 1.08 0.007147
Target:  5'- gCAUUCCUGGAAAAAGUGGAGGGGGCGu -3'
miRNA:   3'- -GUAAGGACCUUUUUCACCUCCCCCGC- -5'
33624 3' -52.6 NC_007605.1 + 171082 1.08 0.007147
Target:  5'- gCAUUCCUGGAAAAAGUGGAGGGGGCGu -3'
miRNA:   3'- -GUAAGGACCUUUUUCACCUCCCCCGC- -5'
33624 3' -52.6 NC_007605.1 + 40152 0.78 0.468696
Target:  5'- ---aCCUGGAAGGcAGgGGGGGGGGCa -3'
miRNA:   3'- guaaGGACCUUUU-UCaCCUCCCCCGc -5'
33624 3' -52.6 NC_007605.1 + 108825 0.77 0.517478
Target:  5'- ---cCCUGGcAGAGGUGGAcgGGGGGCu -3'
miRNA:   3'- guaaGGACCuUUUUCACCU--CCCCCGc -5'
33624 3' -52.6 NC_007605.1 + 10708 0.77 0.557906
Target:  5'- -cUUUCUGGAGGGAGUGuGGGGuGGGCc -3'
miRNA:   3'- guAAGGACCUUUUUCAC-CUCC-CCCGc -5'
33624 3' -52.6 NC_007605.1 + 34621 0.76 0.609581
Target:  5'- ---gCCUGGuGAGAaguuGGUGGuGGGGGCGg -3'
miRNA:   3'- guaaGGACC-UUUU----UCACCuCCCCCGC- -5'
33624 3' -52.6 NC_007605.1 + 131624 0.75 0.658561
Target:  5'- ---cCCUGGggGagggaaccggguggGAGcagGGAGGGGGCGu -3'
miRNA:   3'- guaaGGACCuuU--------------UUCa--CCUCCCCCGC- -5'
33624 3' -52.6 NC_007605.1 + 136506 0.74 0.702963
Target:  5'- ---cCCUGGAcgggacuGGGGUGGAcacagGGGGGCGg -3'
miRNA:   3'- guaaGGACCUu------UUUCACCU-----CCCCCGC- -5'
33624 3' -52.6 NC_007605.1 + 142644 0.74 0.702963
Target:  5'- ---cCCUGGAcgggacuGGGGUGGAcacagGGGGGCGg -3'
miRNA:   3'- guaaGGACCUu------UUUCACCU-----CCCCCGC- -5'
33624 3' -52.6 NC_007605.1 + 135160 0.74 0.702963
Target:  5'- gCAUcCCUGcGcuGAGGUGGuGGGGGUGg -3'
miRNA:   3'- -GUAaGGAC-CuuUUUCACCuCCCCCGC- -5'
33624 3' -52.6 NC_007605.1 + 145712 0.74 0.702963
Target:  5'- ---cCCUGGAcgggacuGGGGUGGAcacagGGGGGCGg -3'
miRNA:   3'- guaaGGACCUu------UUUCACCU-----CCCCCGC- -5'
33624 3' -52.6 NC_007605.1 + 148781 0.74 0.702963
Target:  5'- ---cCCUGGAcgggacuGGGGUGGAcacagGGGGGCGg -3'
miRNA:   3'- guaaGGACCUu------UUUCACCU-----CCCCCGC- -5'
33624 3' -52.6 NC_007605.1 + 151850 0.74 0.702963
Target:  5'- ---cCCUGGAcgggacuGGGGUGGAcacagGGGGGCGg -3'
miRNA:   3'- guaaGGACCUu------UUUCACCU-----CCCCCGC- -5'
33624 3' -52.6 NC_007605.1 + 154919 0.74 0.702963
Target:  5'- ---cCCUGGAcgggacuGGGGUGGAcacagGGGGGCGg -3'
miRNA:   3'- guaaGGACCUu------UUUCACCU-----CCCCCGC- -5'
33624 3' -52.6 NC_007605.1 + 157988 0.74 0.702963
Target:  5'- ---cCCUGGAcgggacuGGGGUGGAcacagGGGGGCGg -3'
miRNA:   3'- guaaGGACCUu------UUUCACCU-----CCCCCGC- -5'
33624 3' -52.6 NC_007605.1 + 139575 0.74 0.702963
Target:  5'- ---cCCUGGAcgggacuGGGGUGGAcacagGGGGGCGg -3'
miRNA:   3'- guaaGGACCUu------UUUCACCU-----CCCCCGC- -5'
33624 3' -52.6 NC_007605.1 + 141298 0.73 0.743252
Target:  5'- --gUCuCUGGAGGAcgGGgacGGAGGGGGCc -3'
miRNA:   3'- guaAG-GACCUUUU--UCa--CCUCCCCCGc -5'
33624 3' -52.6 NC_007605.1 + 138229 0.73 0.743252
Target:  5'- --gUCuCUGGAGGAcgGGgacGGAGGGGGCc -3'
miRNA:   3'- guaAG-GACCUUUU--UCa--CCUCCCCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.