miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33624 3' -52.6 NC_007605.1 + 4502 0.68 0.958525
Target:  5'- ---gCCUGGuguuuGAGGUGGAGGagcgcagcguGGGUGa -3'
miRNA:   3'- guaaGGACCuu---UUUCACCUCC----------CCCGC- -5'
33624 3' -52.6 NC_007605.1 + 5402 0.67 0.962153
Target:  5'- --aUCCcgUGGAGAGuagGGAGGGGGa- -3'
miRNA:   3'- guaAGG--ACCUUUUucaCCUCCCCCgc -5'
33624 3' -52.6 NC_007605.1 + 6423 0.67 0.971699
Target:  5'- gGUUCCcaGAGAGGGUaaaaGAGGGGGCc -3'
miRNA:   3'- gUAAGGacCUUUUUCAc---CUCCCCCGc -5'
33624 3' -52.6 NC_007605.1 + 9901 0.68 0.957772
Target:  5'- ---aCCUGGcccucuuuGUGGAcGGGGGCu -3'
miRNA:   3'- guaaGGACCuuuuu---CACCU-CCCCCGc -5'
33624 3' -52.6 NC_007605.1 + 10708 0.77 0.557906
Target:  5'- -cUUUCUGGAGGGAGUGuGGGGuGGGCc -3'
miRNA:   3'- guAAGGACCUUUUUCAC-CUCC-CCCGc -5'
33624 3' -52.6 NC_007605.1 + 11853 0.68 0.941661
Target:  5'- gGggCCUGcGAGGAGGcgcUGGcGGGGGCa -3'
miRNA:   3'- gUaaGGAC-CUUUUUC---ACCuCCCCCGc -5'
33624 3' -52.6 NC_007605.1 + 11954 0.67 0.968733
Target:  5'- --cUCCUcGGgcGAcgcGGUGGAGGGcugaaGGCGg -3'
miRNA:   3'- guaAGGA-CCuuUU---UCACCUCCC-----CCGC- -5'
33624 3' -52.6 NC_007605.1 + 12556 0.69 0.909011
Target:  5'- ---cCCgGGGA--AGUGGAGGGGGa- -3'
miRNA:   3'- guaaGGaCCUUuuUCACCUCCCCCgc -5'
33624 3' -52.6 NC_007605.1 + 15156 0.71 0.859923
Target:  5'- --aUUCUGGuccuGGUGGcGGGGGUGg -3'
miRNA:   3'- guaAGGACCuuuuUCACCuCCCCCGC- -5'
33624 3' -52.6 NC_007605.1 + 15625 0.69 0.909011
Target:  5'- ---cCCgGGGA--AGUGGAGGGGGa- -3'
miRNA:   3'- guaaGGaCCUUuuUCACCUCCCCCgc -5'
33624 3' -52.6 NC_007605.1 + 18359 0.72 0.809503
Target:  5'- ---cCCaaGGggGGAGUGaAGGGGGCGa -3'
miRNA:   3'- guaaGGa-CCuuUUUCACcUCCCCCGC- -5'
33624 3' -52.6 NC_007605.1 + 18694 0.69 0.909011
Target:  5'- ---cCCgGGGA--AGUGGAGGGGGa- -3'
miRNA:   3'- guaaGGaCCUUuuUCACCUCCCCCgc -5'
33624 3' -52.6 NC_007605.1 + 19901 0.66 0.983555
Target:  5'- -cUUCCUGGguGAGGccgGGAGccuGGGGUu -3'
miRNA:   3'- guAAGGACCuuUUUCa--CCUC---CCCCGc -5'
33624 3' -52.6 NC_007605.1 + 21763 0.69 0.909011
Target:  5'- ---cCCgGGGA--AGUGGAGGGGGa- -3'
miRNA:   3'- guaaGGaCCUUuuUCACCUCCCCCgc -5'
33624 3' -52.6 NC_007605.1 + 22897 0.71 0.859923
Target:  5'- ---aCCaGGGAGGccugGGAGGGGGCGa -3'
miRNA:   3'- guaaGGaCCUUUUuca-CCUCCCCCGC- -5'
33624 3' -52.6 NC_007605.1 + 24832 0.69 0.909011
Target:  5'- ---cCCgGGGA--AGUGGAGGGGGa- -3'
miRNA:   3'- guaaGGaCCUUuuUCACCUCCCCCgc -5'
33624 3' -52.6 NC_007605.1 + 27901 0.69 0.909011
Target:  5'- ---cCCgGGGA--AGUGGAGGGGGa- -3'
miRNA:   3'- guaaGGaCCUUuuUCACCUCCCCCgc -5'
33624 3' -52.6 NC_007605.1 + 30969 0.69 0.909011
Target:  5'- ---cCCgGGGA--AGUGGAGGGGGa- -3'
miRNA:   3'- guaaGGaCCUUuuUCACCUCCCCCgc -5'
33624 3' -52.6 NC_007605.1 + 34038 0.69 0.909011
Target:  5'- ---cCCgGGGA--AGUGGAGGGGGa- -3'
miRNA:   3'- guaaGGaCCUUuuUCACCUCCCCCgc -5'
33624 3' -52.6 NC_007605.1 + 34621 0.76 0.609581
Target:  5'- ---gCCUGGuGAGAaguuGGUGGuGGGGGCGg -3'
miRNA:   3'- guaaGGACC-UUUU----UCACCuCCCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.