Results 1 - 20 of 304 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33624 | 5' | -70.5 | NC_007605.1 | + | 169520 | 1.09 | 0.000189 |
Target: 5'- cCCCGCGGCCCCCCAGCCCCCCCGCACa -3' miRNA: 3'- -GGGCGCCGGGGGGUCGGGGGGGCGUG- -5' |
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33624 | 5' | -70.5 | NC_007605.1 | + | 170057 | 1.09 | 0.000189 |
Target: 5'- cCCCGCGGCCCCCCAGCCCCCCCGCACa -3' miRNA: 3'- -GGGCGCCGGGGGGUCGGGGGGGCGUG- -5' |
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33624 | 5' | -70.5 | NC_007605.1 | + | 170580 | 1.09 | 0.000189 |
Target: 5'- cCCCGCGGCCCCCCAGCCCCCCCGCACa -3' miRNA: 3'- -GGGCGCCGGGGGGUCGGGGGGGCGUG- -5' |
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33624 | 5' | -70.5 | NC_007605.1 | + | 171117 | 1.09 | 0.000189 |
Target: 5'- cCCCGCGGCCCCCCAGCCCCCCCGCACa -3' miRNA: 3'- -GGGCGCCGGGGGGUCGGGGGGGCGUG- -5' |
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33624 | 5' | -70.5 | NC_007605.1 | + | 50709 | 0.82 | 0.022985 |
Target: 5'- cUCCGCGGCUucuUCCCGGCCCCCCUGCu- -3' miRNA: 3'- -GGGCGCCGG---GGGGUCGGGGGGGCGug -5' |
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33624 | 5' | -70.5 | NC_007605.1 | + | 2167 | 0.79 | 0.038597 |
Target: 5'- -gCGCGGCCCCCCAuGCCCCagcaagCCGCAg -3' miRNA: 3'- ggGCGCCGGGGGGU-CGGGGg-----GGCGUg -5' |
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33624 | 5' | -70.5 | NC_007605.1 | + | 1988 | 0.78 | 0.045827 |
Target: 5'- gCCCGCGcgcGCCCCCCGaCCCCCCCGa-- -3' miRNA: 3'- -GGGCGC---CGGGGGGUcGGGGGGGCgug -5' |
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33624 | 5' | -70.5 | NC_007605.1 | + | 928 | 0.78 | 0.050535 |
Target: 5'- gCCCGCGcggcGCCCCCCGaCCCCCCCGa-- -3' miRNA: 3'- -GGGCGC----CGGGGGGUcGGGGGGGCgug -5' |
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33624 | 5' | -70.5 | NC_007605.1 | + | 390 | 0.78 | 0.050535 |
Target: 5'- gCCCGCGcggcGCCCCCCGaCCCCCCCGa-- -3' miRNA: 3'- -GGGCGC----CGGGGGGUcGGGGGGGCgug -5' |
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33624 | 5' | -70.5 | NC_007605.1 | + | 1450 | 0.78 | 0.050535 |
Target: 5'- gCCCGCGcggcGCCCCCCGaCCCCCCCGa-- -3' miRNA: 3'- -GGGCGC----CGGGGGGUcGGGGGGGCgug -5' |
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33624 | 5' | -70.5 | NC_007605.1 | + | 113584 | 0.77 | 0.058492 |
Target: 5'- cUCCGCGGCCCCggccuCCAGCCCUCCCc--- -3' miRNA: 3'- -GGGCGCCGGGG-----GGUCGGGGGGGcgug -5' |
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33624 | 5' | -70.5 | NC_007605.1 | + | 984 | 0.77 | 0.059786 |
Target: 5'- gCCCGCaGCCCCCgGGCccgcggaccccgaCCCCCCGC-Cg -3' miRNA: 3'- -GGGCGcCGGGGGgUCG-------------GGGGGGCGuG- -5' |
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33624 | 5' | -70.5 | NC_007605.1 | + | 132716 | 0.76 | 0.062913 |
Target: 5'- aCCgGCGGCCgCCCGGCUgCCCCGgaGCg -3' miRNA: 3'- -GGgCGCCGGgGGGUCGGgGGGGCg-UG- -5' |
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33624 | 5' | -70.5 | NC_007605.1 | + | 132466 | 0.76 | 0.062913 |
Target: 5'- aCCgGCGGCCgCCCGGCUgCCCCCGgaGCg -3' miRNA: 3'- -GGgCGCCGGgGGGUCGG-GGGGGCg-UG- -5' |
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33624 | 5' | -70.5 | NC_007605.1 | + | 131966 | 0.76 | 0.062913 |
Target: 5'- aCCgGCGGCCgCCCGGCUgCCCCCGgaGCg -3' miRNA: 3'- -GGgCGCCGGgGGGUCGG-GGGGGCg-UG- -5' |
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33624 | 5' | -70.5 | NC_007605.1 | + | 132091 | 0.76 | 0.062913 |
Target: 5'- aCCgGCGGCCgCCCGGCUgCCCCCGgaGCg -3' miRNA: 3'- -GGgCGCCGGgGGGUCGG-GGGGGCg-UG- -5' |
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33624 | 5' | -70.5 | NC_007605.1 | + | 132216 | 0.76 | 0.062913 |
Target: 5'- aCCgGCGGCCgCCCGGCUgCCCCCGgaGCg -3' miRNA: 3'- -GGgCGCCGGgGGGUCGG-GGGGGCg-UG- -5' |
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33624 | 5' | -70.5 | NC_007605.1 | + | 132840 | 0.76 | 0.062913 |
Target: 5'- aCCgGCGGCCgCCCGGCUgCCCCCGgaGCg -3' miRNA: 3'- -GGgCGCCGGgGGGUCGG-GGGGGCg-UG- -5' |
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33624 | 5' | -70.5 | NC_007605.1 | + | 132591 | 0.76 | 0.062913 |
Target: 5'- aCCgGCGGCCgCCCGGCUgCCCCCGgaGCg -3' miRNA: 3'- -GGgCGCCGGgGGGUCGG-GGGGGCg-UG- -5' |
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33624 | 5' | -70.5 | NC_007605.1 | + | 132341 | 0.76 | 0.062913 |
Target: 5'- aCCgGCGGCCgCCCGGCUgCCCCCGgaGCg -3' miRNA: 3'- -GGgCGCCGGgGGGUCGG-GGGGGCg-UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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