Results 1 - 20 of 304 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33624 | 5' | -70.5 | NC_007605.1 | + | 28769 | 0.75 | 0.084037 |
Target: 5'- cCCCgGCGGCCCggugUCAGuCCCCCCUGCAg -3' miRNA: 3'- -GGG-CGCCGGGg---GGUC-GGGGGGGCGUg -5' |
|||||||
33624 | 5' | -70.5 | NC_007605.1 | + | 30536 | 0.76 | 0.069985 |
Target: 5'- cCCC-CGGUCCCCaguagggccgccuGCCCCCCUGCACc -3' miRNA: 3'- -GGGcGCCGGGGGgu-----------CGGGGGGGCGUG- -5' |
|||||||
33624 | 5' | -70.5 | NC_007605.1 | + | 33605 | 0.76 | 0.069985 |
Target: 5'- cCCC-CGGUCCCCaguagggccgccuGCCCCCCUGCACc -3' miRNA: 3'- -GGGcGCCGGGGGgu-----------CGGGGGGGCGUG- -5' |
|||||||
33624 | 5' | -70.5 | NC_007605.1 | + | 159774 | 0.76 | 0.071007 |
Target: 5'- cCCCGCcagcGCCUCCucgCAGgCCCCCCGCACc -3' miRNA: 3'- -GGGCGc---CGGGGG---GUCgGGGGGGCGUG- -5' |
|||||||
33624 | 5' | -70.5 | NC_007605.1 | + | 13424 | 0.75 | 0.084037 |
Target: 5'- cCCCgGCGGCCCggugUCAGuCCCCCCUGCAg -3' miRNA: 3'- -GGG-CGCCGGGg---GGUC-GGGGGGGCGUg -5' |
|||||||
33624 | 5' | -70.5 | NC_007605.1 | + | 16493 | 0.75 | 0.084037 |
Target: 5'- cCCCgGCGGCCCggugUCAGuCCCCCCUGCAg -3' miRNA: 3'- -GGG-CGCCGGGg---GGUC-GGGGGGGCGUg -5' |
|||||||
33624 | 5' | -70.5 | NC_007605.1 | + | 19562 | 0.75 | 0.084037 |
Target: 5'- cCCCgGCGGCCCggugUCAGuCCCCCCUGCAg -3' miRNA: 3'- -GGG-CGCCGGGg---GGUC-GGGGGGGCGUg -5' |
|||||||
33624 | 5' | -70.5 | NC_007605.1 | + | 22631 | 0.75 | 0.084037 |
Target: 5'- cCCCgGCGGCCCggugUCAGuCCCCCCUGCAg -3' miRNA: 3'- -GGG-CGCCGGGg---GGUC-GGGGGGGCGUg -5' |
|||||||
33624 | 5' | -70.5 | NC_007605.1 | + | 25700 | 0.75 | 0.084037 |
Target: 5'- cCCCgGCGGCCCggugUCAGuCCCCCCUGCAg -3' miRNA: 3'- -GGG-CGCCGGGg---GGUC-GGGGGGGCGUg -5' |
|||||||
33624 | 5' | -70.5 | NC_007605.1 | + | 27467 | 0.76 | 0.069985 |
Target: 5'- cCCC-CGGUCCCCaguagggccgccuGCCCCCCUGCACc -3' miRNA: 3'- -GGGcGCCGGGGGgu-----------CGGGGGGGCGUG- -5' |
|||||||
33624 | 5' | -70.5 | NC_007605.1 | + | 24398 | 0.76 | 0.069985 |
Target: 5'- cCCC-CGGUCCCCaguagggccgccuGCCCCCCUGCACc -3' miRNA: 3'- -GGGcGCCGGGGGgu-----------CGGGGGGGCGUG- -5' |
|||||||
33624 | 5' | -70.5 | NC_007605.1 | + | 21329 | 0.76 | 0.069985 |
Target: 5'- cCCC-CGGUCCCCaguagggccgccuGCCCCCCUGCACc -3' miRNA: 3'- -GGGcGCCGGGGGgu-----------CGGGGGGGCGUG- -5' |
|||||||
33624 | 5' | -70.5 | NC_007605.1 | + | 170057 | 1.09 | 0.000189 |
Target: 5'- cCCCGCGGCCCCCCAGCCCCCCCGCACa -3' miRNA: 3'- -GGGCGCCGGGGGGUCGGGGGGGCGUG- -5' |
|||||||
33624 | 5' | -70.5 | NC_007605.1 | + | 170580 | 1.09 | 0.000189 |
Target: 5'- cCCCGCGGCCCCCCAGCCCCCCCGCACa -3' miRNA: 3'- -GGGCGCCGGGGGGUCGGGGGGGCGUG- -5' |
|||||||
33624 | 5' | -70.5 | NC_007605.1 | + | 171117 | 1.09 | 0.000189 |
Target: 5'- cCCCGCGGCCCCCCAGCCCCCCCGCACa -3' miRNA: 3'- -GGGCGCCGGGGGGUCGGGGGGGCGUG- -5' |
|||||||
33624 | 5' | -70.5 | NC_007605.1 | + | 50709 | 0.82 | 0.022985 |
Target: 5'- cUCCGCGGCUucuUCCCGGCCCCCCUGCu- -3' miRNA: 3'- -GGGCGCCGG---GGGGUCGGGGGGGCGug -5' |
|||||||
33624 | 5' | -70.5 | NC_007605.1 | + | 34907 | 0.76 | 0.064457 |
Target: 5'- cCCCgGCGGCCCggugUCAGUCCCCCUGCAg -3' miRNA: 3'- -GGG-CGCCGGGg---GGUCGGGGGGGCGUg -5' |
|||||||
33624 | 5' | -70.5 | NC_007605.1 | + | 12122 | 0.76 | 0.069985 |
Target: 5'- cCCC-CGGUCCCCaguagggccgccuGCCCCCCUGCACc -3' miRNA: 3'- -GGGcGCCGGGGGgu-----------CGGGGGGGCGUG- -5' |
|||||||
33624 | 5' | -70.5 | NC_007605.1 | + | 15191 | 0.76 | 0.069985 |
Target: 5'- cCCC-CGGUCCCCaguagggccgccuGCCCCCCUGCACc -3' miRNA: 3'- -GGGcGCCGGGGGgu-----------CGGGGGGGCGUG- -5' |
|||||||
33624 | 5' | -70.5 | NC_007605.1 | + | 18260 | 0.76 | 0.069985 |
Target: 5'- cCCC-CGGUCCCCaguagggccgccuGCCCCCCUGCACc -3' miRNA: 3'- -GGGcGCCGGGGGgu-----------CGGGGGGGCGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home