miRNA display CGI


Results 1 - 20 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33625 5' -66.2 NC_007605.1 + 464 0.68 0.386101
Target:  5'- cCGCGgaccccgaCCCCCcGCCGCccGCCcGCCGuAGCg -3'
miRNA:   3'- -GCGC--------GGGGGcCGGCG--CGGuCGGU-UCG- -5'
33625 5' -66.2 NC_007605.1 + 1001 0.68 0.386101
Target:  5'- cCGCGgaccccgaCCCCCcGCCGCccGCCcGCCGuAGCg -3'
miRNA:   3'- -GCGC--------GGGGGcCGGCG--CGGuCGGU-UCG- -5'
33625 5' -66.2 NC_007605.1 + 1524 0.68 0.386101
Target:  5'- cCGCGgaccccgaCCCCCcGCCGCccGCCcGCCGuAGCg -3'
miRNA:   3'- -GCGC--------GGGGGcCGGCG--CGGuCGGU-UCG- -5'
33625 5' -66.2 NC_007605.1 + 2061 0.68 0.386101
Target:  5'- cCGCGgaccccgaCCCCCcGCCGCccGCCcGCCGuAGCg -3'
miRNA:   3'- -GCGC--------GGGGGcCGGCG--CGGuCGGU-UCG- -5'
33625 5' -66.2 NC_007605.1 + 3059 0.7 0.294439
Target:  5'- gCGCGCCCCCcgGGCCccaGUGCUGuGaUCGAGCa -3'
miRNA:   3'- -GCGCGGGGG--CCGG---CGCGGU-C-GGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 4861 0.69 0.334505
Target:  5'- uGCGCCCCgGGCaccagGgGCCaugaaAGCCuccuGGCg -3'
miRNA:   3'- gCGCGGGGgCCGg----CgCGG-----UCGGu---UCG- -5'
33625 5' -66.2 NC_007605.1 + 5017 0.66 0.494707
Target:  5'- -cUGCCCUggcaGGCCGUGCCA-CCGuGGCg -3'
miRNA:   3'- gcGCGGGGg---CCGGCGCGGUcGGU-UCG- -5'
33625 5' -66.2 NC_007605.1 + 9580 0.67 0.417852
Target:  5'- aCGCGgCCCUgcagGGCCGgGUguaCGGCCGgcGGCu -3'
miRNA:   3'- -GCGCgGGGG----CCGGCgCG---GUCGGU--UCG- -5'
33625 5' -66.2 NC_007605.1 + 10344 0.69 0.306708
Target:  5'- uGCagGCCCCCggggcugGGCUGCGCaagcaGGCCGGGg -3'
miRNA:   3'- gCG--CGGGGG-------CCGGCGCGg----UCGGUUCg -5'
33625 5' -66.2 NC_007605.1 + 10782 0.67 0.409766
Target:  5'- cCGCGUcgcaggCCUCGGCCGgGCUgcuGCUggGUg -3'
miRNA:   3'- -GCGCG------GGGGCCGGCgCGGu--CGGuuCG- -5'
33625 5' -66.2 NC_007605.1 + 10911 0.67 0.417852
Target:  5'- gGgGCUgCUGGCgGCGgcguaCAGCCAGGUg -3'
miRNA:   3'- gCgCGGgGGCCGgCGCg----GUCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 11011 0.72 0.196749
Target:  5'- uGCGCaaCgCCGGCC-UGCUGGCCGAGCu -3'
miRNA:   3'- gCGCG--GgGGCCGGcGCGGUCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 11629 0.69 0.334505
Target:  5'- gCGCGgUCCCGGgcCCGgGgCGGCCGgaGGCa -3'
miRNA:   3'- -GCGCgGGGGCC--GGCgCgGUCGGU--UCG- -5'
33625 5' -66.2 NC_007605.1 + 12124 0.66 0.485836
Target:  5'- gGUGCCCC-GGCCG-GCUggGGCacgaGAGCc -3'
miRNA:   3'- gCGCGGGGgCCGGCgCGG--UCGg---UUCG- -5'
33625 5' -66.2 NC_007605.1 + 12164 0.68 0.393889
Target:  5'- gGCGCCCUcuCGGaCGCGCUcaAGCgCAAGg -3'
miRNA:   3'- gCGCGGGG--GCCgGCGCGG--UCG-GUUCg -5'
33625 5' -66.2 NC_007605.1 + 12181 0.68 0.355984
Target:  5'- aCGCaCCCCgGGCCagGCcaccuuagacCCGGCCAAGCc -3'
miRNA:   3'- -GCGcGGGGgCCGG--CGc---------GGUCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 12365 0.66 0.47704
Target:  5'- uCGgGUCCCUGGgaggacaggCGCGCCGGCgAGGg -3'
miRNA:   3'- -GCgCGGGGGCCg--------GCGCGGUCGgUUCg -5'
33625 5' -66.2 NC_007605.1 + 12414 0.77 0.09119
Target:  5'- gGCGCCCggaguggggccggUCGGCUGgGCUGGCCGAGCc -3'
miRNA:   3'- gCGCGGG-------------GGCCGGCgCGGUCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 12717 0.69 0.348718
Target:  5'- --gGCCCCCcagacccgGGUCuCgGCCAGCCGAGCc -3'
miRNA:   3'- gcgCGGGGG--------CCGGcG-CGGUCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 12789 0.67 0.417039
Target:  5'- uGCGCCgggcggaCgCGGUCaGCcCCGGCCAGGCc -3'
miRNA:   3'- gCGCGG-------GgGCCGG-CGcGGUCGGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.