miRNA display CGI


Results 1 - 20 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33625 5' -66.2 NC_007605.1 + 40331 0.73 0.18352
Target:  5'- uGCGCUCCCaGGCCG-GaCCcugguGCCAGGCa -3'
miRNA:   3'- gCGCGGGGG-CCGGCgC-GGu----CGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 160019 0.77 0.103343
Target:  5'- cCGCGCCCUCcucugGGCCGC-CCGGCCucGCc -3'
miRNA:   3'- -GCGCGGGGG-----CCGGCGcGGUCGGuuCG- -5'
33625 5' -66.2 NC_007605.1 + 50234 0.76 0.108514
Target:  5'- gGCGCaCCUCgGGCCGCGC--GCCAGGCu -3'
miRNA:   3'- gCGCG-GGGG-CCGGCGCGguCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 53822 0.76 0.108514
Target:  5'- aGcCGUUCCCGGCCGCuGCCcgGGCCAGGg -3'
miRNA:   3'- gC-GCGGGGGCCGGCG-CGG--UCGGUUCg -5'
33625 5' -66.2 NC_007605.1 + 155714 0.76 0.116726
Target:  5'- aCGCugGCCCCauCGGCCuuGCGCCGGCCcAGUa -3'
miRNA:   3'- -GCG--CGGGG--GCCGG--CGCGGUCGGuUCG- -5'
33625 5' -66.2 NC_007605.1 + 67673 0.74 0.144955
Target:  5'- --gGCCCCCGGCUGgcCGCCguGGCCAAcGCa -3'
miRNA:   3'- gcgCGGGGGCCGGC--GCGG--UCGGUU-CG- -5'
33625 5' -66.2 NC_007605.1 + 161268 0.74 0.163216
Target:  5'- --aGCCCCCGGCCuGCuuGCgCAGCCcAGCc -3'
miRNA:   3'- gcgCGGGGGCCGG-CG--CG-GUCGGuUCG- -5'
33625 5' -66.2 NC_007605.1 + 65301 0.73 0.179288
Target:  5'- uGCGCCUCUGGCgGUGCgGGCacAGCg -3'
miRNA:   3'- gCGCGGGGGCCGgCGCGgUCGguUCG- -5'
33625 5' -66.2 NC_007605.1 + 60263 0.73 0.183093
Target:  5'- gGCGCCUUCugaggguGGCCGUGUCGGCCGuGGCc -3'
miRNA:   3'- gCGCGGGGG-------CCGGCGCGGUCGGU-UCG- -5'
33625 5' -66.2 NC_007605.1 + 150754 0.77 0.096021
Target:  5'- cCGUGUCCCagccgaGGCCGCGCCAGagcaGAGCc -3'
miRNA:   3'- -GCGCGGGGg-----CCGGCGCGGUCgg--UUCG- -5'
33625 5' -66.2 NC_007605.1 + 30828 0.77 0.09119
Target:  5'- gGCGCCCggaguggggccggUCGGCUGgGCUGGCCGAGCc -3'
miRNA:   3'- gCGCGGG-------------GGCCGGCgCGGUCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 27759 0.77 0.09119
Target:  5'- gGCGCCCggaguggggccggUCGGCUGgGCUGGCCGAGCc -3'
miRNA:   3'- gCGCGGG-------------GGCCGGCgCGGUCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 170337 1.09 0.000434
Target:  5'- uCGCGCCCCCGGCCGCGCCAGCCAAGCc -3'
miRNA:   3'- -GCGCGGGGGCCGGCGCGGUCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 170859 1.09 0.000434
Target:  5'- uCGCGCCCCCGGCCGCGCCAGCCAAGCc -3'
miRNA:   3'- -GCGCGGGGGCCGGCGCGGUCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 171397 1.09 0.000434
Target:  5'- uCGCGCCCCCGGCCGCGCCAGCCAAGCc -3'
miRNA:   3'- -GCGCGGGGGCCGGCGCGGUCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 12414 0.77 0.09119
Target:  5'- gGCGCCCggaguggggccggUCGGCUGgGCUGGCCGAGCc -3'
miRNA:   3'- gCGCGGG-------------GGCCGGCgCGGUCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 15483 0.77 0.09119
Target:  5'- gGCGCCCggaguggggccggUCGGCUGgGCUGGCCGAGCc -3'
miRNA:   3'- gCGCGGG-------------GGCCGGCgCGGUCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 18552 0.77 0.09119
Target:  5'- gGCGCCCggaguggggccggUCGGCUGgGCUGGCCGAGCc -3'
miRNA:   3'- gCGCGGG-------------GGCCGGCgCGGUCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 21621 0.77 0.09119
Target:  5'- gGCGCCCggaguggggccggUCGGCUGgGCUGGCCGAGCc -3'
miRNA:   3'- gCGCGGG-------------GGCCGGCgCGGUCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 24690 0.77 0.09119
Target:  5'- gGCGCCCggaguggggccggUCGGCUGgGCUGGCCGAGCc -3'
miRNA:   3'- gCGCGGG-------------GGCCGGCgCGGUCGGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.