miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33626 3' -54.9 NC_007605.1 + 1388 0.67 0.941729
Target:  5'- cGGUGGCCUgcucaccaugguAGCCGGcgcuGUGUGGCUGAcGGu -3'
miRNA:   3'- -CCACUGGG------------UCGGUU----CGCACUGGUU-CC- -5'
33626 3' -54.9 NC_007605.1 + 2323 0.72 0.71114
Target:  5'- uGGUGGCCgGGCCAGagaccGC-UGACaCGAGGc -3'
miRNA:   3'- -CCACUGGgUCGGUU-----CGcACUG-GUUCC- -5'
33626 3' -54.9 NC_007605.1 + 2704 0.68 0.88432
Target:  5'- cGGcGGCCCGGCgccaaCAGGCcuuucaGACCAGGGc -3'
miRNA:   3'- -CCaCUGGGUCG-----GUUCGca----CUGGUUCC- -5'
33626 3' -54.9 NC_007605.1 + 4417 0.68 0.891097
Target:  5'- -aUGGCCCuGGCCGGGCagcggggaGUGACCAu-- -3'
miRNA:   3'- ccACUGGG-UCGGUUCG--------CACUGGUucc -5'
33626 3' -54.9 NC_007605.1 + 4847 0.72 0.721008
Target:  5'- aGGUGGCCguGCUAuGCGccccggGcACCAGGGg -3'
miRNA:   3'- -CCACUGGguCGGUuCGCa-----C-UGGUUCC- -5'
33626 3' -54.9 NC_007605.1 + 7608 0.67 0.941729
Target:  5'- aGGUGGCcacacuggggaCCGGCUAcGCG-GGCCAcAGGu -3'
miRNA:   3'- -CCACUG-----------GGUCGGUuCGCaCUGGU-UCC- -5'
33626 3' -54.9 NC_007605.1 + 7815 0.66 0.959635
Target:  5'- aGG-GGCCgGGUCucgaggcccucuguGGCGaGACCAGGGa -3'
miRNA:   3'- -CCaCUGGgUCGGu-------------UCGCaCUGGUUCC- -5'
33626 3' -54.9 NC_007605.1 + 8232 0.77 0.445298
Target:  5'- --gGACCaGGCCAAG-GUGGCCAAGGu -3'
miRNA:   3'- ccaCUGGgUCGGUUCgCACUGGUUCC- -5'
33626 3' -54.9 NC_007605.1 + 10726 0.7 0.813212
Target:  5'- gGGUgGGCCCGGggcagcCCAggacaacuuuaucAGCGUGGCCGAGc -3'
miRNA:   3'- -CCA-CUGGGUC------GGU-------------UCGCACUGGUUCc -5'
33626 3' -54.9 NC_007605.1 + 10937 0.67 0.93704
Target:  5'- aGGUGuacGCCCuggcgguugAGCUGAGCGUGugCAc-- -3'
miRNA:   3'- -CCAC---UGGG---------UCGGUUCGCACugGUucc -5'
33626 3' -54.9 NC_007605.1 + 12065 0.68 0.88432
Target:  5'- ---aACCgAGCCAugcAGCGguugGGCCGAGGc -3'
miRNA:   3'- ccacUGGgUCGGU---UCGCa---CUGGUUCC- -5'
33626 3' -54.9 NC_007605.1 + 12123 0.66 0.958186
Target:  5'- aGGUGcCCCGGCCG-GCuggGGCaCGAGa -3'
miRNA:   3'- -CCACuGGGUCGGUuCGca-CUG-GUUCc -5'
33626 3' -54.9 NC_007605.1 + 12210 0.66 0.950412
Target:  5'- aGGUGGCCa--CCGAGgGUcuGGCCAAGc -3'
miRNA:   3'- -CCACUGGgucGGUUCgCA--CUGGUUCc -5'
33626 3' -54.9 NC_007605.1 + 17635 0.71 0.769041
Target:  5'- cGGUGACgCUgcagGGCCGcacgauguuggAGCG-GGCCAAGGc -3'
miRNA:   3'- -CCACUG-GG----UCGGU-----------UCGCaCUGGUUCC- -5'
33626 3' -54.9 NC_007605.1 + 18408 0.67 0.940347
Target:  5'- --cGGCCUAcGCCGAGCGgcacggcguucccgUGGCCGuGGa -3'
miRNA:   3'- ccaCUGGGU-CGGUUCGC--------------ACUGGUuCC- -5'
33626 3' -54.9 NC_007605.1 + 18943 0.69 0.877322
Target:  5'- cGGUGGgaucaugaagcCCCAGggGAGCGUGGCCcguGGa -3'
miRNA:   3'- -CCACU-----------GGGUCggUUCGCACUGGuu-CC- -5'
33626 3' -54.9 NC_007605.1 + 20802 0.67 0.936558
Target:  5'- --aGGCCCgggggcuGGCgAGGCGgcguccgcgGGCCGAGGg -3'
miRNA:   3'- ccaCUGGG-------UCGgUUCGCa--------CUGGUUCC- -5'
33626 3' -54.9 NC_007605.1 + 20955 0.73 0.650852
Target:  5'- cGUGACCUGGacauaCAGGUGgacagGGCCGAGGa -3'
miRNA:   3'- cCACUGGGUCg----GUUCGCa----CUGGUUCC- -5'
33626 3' -54.9 NC_007605.1 + 22560 0.68 0.910072
Target:  5'- cGUGA-CCGGCCAgAGCaUGGCCcAGGc -3'
miRNA:   3'- cCACUgGGUCGGU-UCGcACUGGuUCC- -5'
33626 3' -54.9 NC_007605.1 + 24277 0.7 0.831011
Target:  5'- aGGUGGCaguaaaAGCCGAGaaUGAUCAGGGc -3'
miRNA:   3'- -CCACUGgg----UCGGUUCgcACUGGUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.