miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33626 3' -54.9 NC_007605.1 + 154433 0.7 0.814076
Target:  5'- cGGUGGCCCccugguAGCCGucccGGUcagaGGCCGAGGg -3'
miRNA:   3'- -CCACUGGG------UCGGU----UCGca--CUGGUUCC- -5'
33626 3' -54.9 NC_007605.1 + 40284 0.74 0.600122
Target:  5'- gGGgagGACCgCGGCCGAGCc--ACCAGGGg -3'
miRNA:   3'- -CCa--CUGG-GUCGGUUCGcacUGGUUCC- -5'
33626 3' -54.9 NC_007605.1 + 44175 0.73 0.660985
Target:  5'- --aGACCCcagAGUCAGGCuGUGGCCgAAGGg -3'
miRNA:   3'- ccaCUGGG---UCGGUUCG-CACUGG-UUCC- -5'
33626 3' -54.9 NC_007605.1 + 2323 0.72 0.71114
Target:  5'- uGGUGGCCgGGCCAGagaccGC-UGACaCGAGGc -3'
miRNA:   3'- -CCACUGGgUCGGUU-----CGcACUG-GUUCC- -5'
33626 3' -54.9 NC_007605.1 + 4847 0.72 0.721008
Target:  5'- aGGUGGCCguGCUAuGCGccccggGcACCAGGGg -3'
miRNA:   3'- -CCACUGGguCGGUuCGCa-----C-UGGUUCC- -5'
33626 3' -54.9 NC_007605.1 + 164010 0.71 0.750125
Target:  5'- uGUGGCCCgcguAGCCGguccccAGUGUGGCCAccucccuaagAGGg -3'
miRNA:   3'- cCACUGGG----UCGGU------UCGCACUGGU----------UCC- -5'
33626 3' -54.9 NC_007605.1 + 62615 0.71 0.750125
Target:  5'- uGGUGGCggaggaccgccgCCGGgUAAGCGUGGCCGcucaugAGGg -3'
miRNA:   3'- -CCACUG------------GGUCgGUUCGCACUGGU------UCC- -5'
33626 3' -54.9 NC_007605.1 + 54535 0.71 0.758692
Target:  5'- gGGUGG-CgGGCCAAGCGUccagucuGGCCAgAGGg -3'
miRNA:   3'- -CCACUgGgUCGGUUCGCA-------CUGGU-UCC- -5'
33626 3' -54.9 NC_007605.1 + 167394 0.71 0.787476
Target:  5'- uGUGGCUuuuCAGCCuagacagacAGUGUGGCUAAGGg -3'
miRNA:   3'- cCACUGG---GUCGGu--------UCGCACUGGUUCC- -5'
33626 3' -54.9 NC_007605.1 + 129519 0.74 0.600122
Target:  5'- aGGUGACCCAGCUccuccaucuuGAcCGUGGCCAu-- -3'
miRNA:   3'- -CCACUGGGUCGG----------UUcGCACUGGUucc -5'
33626 3' -54.9 NC_007605.1 + 171260 0.75 0.569903
Target:  5'- --gGGCgCAGCCAuGCGUGACCGugaugAGGg -3'
miRNA:   3'- ccaCUGgGUCGGUuCGCACUGGU-----UCC- -5'
33626 3' -54.9 NC_007605.1 + 170722 0.75 0.569903
Target:  5'- --gGGCgCAGCCAuGCGUGACCGugaugAGGg -3'
miRNA:   3'- ccaCUGgGUCGGUuCGCACUGGU-----UCC- -5'
33626 3' -54.9 NC_007605.1 + 170446 1.13 0.002355
Target:  5'- gGGUGACCCAGCCAAGCGUGACCAAGGg -3'
miRNA:   3'- -CCACUGGGUCGGUUCGCACUGGUUCC- -5'
33626 3' -54.9 NC_007605.1 + 170968 1.13 0.002355
Target:  5'- gGGUGACCCAGCCAAGCGUGACCAAGGg -3'
miRNA:   3'- -CCACUGGGUCGGUUCGCACUGGUUCC- -5'
33626 3' -54.9 NC_007605.1 + 171506 1.13 0.002355
Target:  5'- gGGUGACCCAGCCAAGCGUGACCAAGGg -3'
miRNA:   3'- -CCACUGGGUCGGUUCGCACUGGUUCC- -5'
33626 3' -54.9 NC_007605.1 + 60275 0.81 0.281116
Target:  5'- gGGUGGCCguGUCGGcCGUGGCCAGGGc -3'
miRNA:   3'- -CCACUGGguCGGUUcGCACUGGUUCC- -5'
33626 3' -54.9 NC_007605.1 + 122946 0.78 0.393086
Target:  5'- -cUGACCCGGCCAGGCGc-AUCAGGGc -3'
miRNA:   3'- ccACUGGGUCGGUUCGCacUGGUUCC- -5'
33626 3' -54.9 NC_007605.1 + 82171 0.75 0.549962
Target:  5'- aGGUGccGCCCugAGCCAgAGUGUuaGGCCAGGGg -3'
miRNA:   3'- -CCAC--UGGG--UCGGU-UCGCA--CUGGUUCC- -5'
33626 3' -54.9 NC_007605.1 + 169662 0.75 0.569903
Target:  5'- --gGGCgCAGCCAuGCGUGACCGugaugAGGg -3'
miRNA:   3'- ccaCUGgGUCGGUuCGCACUGGU-----UCC- -5'
33626 3' -54.9 NC_007605.1 + 170200 0.75 0.569903
Target:  5'- --gGGCgCAGCCAuGCGUGACCGugaugAGGg -3'
miRNA:   3'- ccaCUGgGUCGGUuCGCACUGGU-----UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.