miRNA display CGI


Results 41 - 60 of 304 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33627 5' -70.5 NC_007605.1 + 4837 0.66 0.31312
Target:  5'- gCCUGCGGCCUgCCCGGCUCUUCUaCGg -3'
miRNA:   3'- -GGGCGCCGGG-GGGUCGGGGGGGcGUg -5'
33627 5' -70.5 NC_007605.1 + 151121 0.66 0.312474
Target:  5'- cCCCucgGCGGCCcgugCCCCAGCUCCgUCacgggggGCGCa -3'
miRNA:   3'- -GGG---CGCCGG----GGGGUCGGGGgGG-------CGUG- -5'
33627 5' -70.5 NC_007605.1 + 29895 0.66 0.311184
Target:  5'- aCCGaagugaaGGCCCuggaccaacccggcCCgGGCCCCCCgGUAUg -3'
miRNA:   3'- gGGCg------CCGGG--------------GGgUCGGGGGGgCGUG- -5'
33627 5' -70.5 NC_007605.1 + 119575 0.67 0.306704
Target:  5'- gUCCGCGgaaauugguGCCCCUCucuGCCCUCCUG-ACg -3'
miRNA:   3'- -GGGCGC---------CGGGGGGu--CGGGGGGGCgUG- -5'
33627 5' -70.5 NC_007605.1 + 163342 0.67 0.306704
Target:  5'- -aCGCGucaGCCCCCaCAcGCCgCCCUGCGg -3'
miRNA:   3'- ggGCGC---CGGGGG-GU-CGGgGGGGCGUg -5'
33627 5' -70.5 NC_007605.1 + 113479 0.67 0.306068
Target:  5'- cUCUGCGGCCccggccucugcggCCCCGGCCUcugcggCCCCGg-- -3'
miRNA:   3'- -GGGCGCCGG-------------GGGGUCGGG------GGGGCgug -5'
33627 5' -70.5 NC_007605.1 + 75770 0.67 0.30039
Target:  5'- uCCUGCuccuGCCCCuCCugcuccuGCCCCuCCCGCu- -3'
miRNA:   3'- -GGGCGc---CGGGG-GGu------CGGGG-GGGCGug -5'
33627 5' -70.5 NC_007605.1 + 45281 0.67 0.299764
Target:  5'- gCC-UGGCCCCCCgAGCagguccgUCCCCUGcCACg -3'
miRNA:   3'- gGGcGCCGGGGGG-UCG-------GGGGGGC-GUG- -5'
33627 5' -70.5 NC_007605.1 + 165965 0.67 0.294176
Target:  5'- -gCGCGGguCCCCCUAGCCCCggcggggaUCCGgAUg -3'
miRNA:   3'- ggGCGCC--GGGGGGUCGGGG--------GGGCgUG- -5'
33627 5' -70.5 NC_007605.1 + 39 0.67 0.294176
Target:  5'- cCCCGCcaacaccCCCCCCGauGCCCCCCgGgGg -3'
miRNA:   3'- -GGGCGcc-----GGGGGGU--CGGGGGGgCgUg -5'
33627 5' -70.5 NC_007605.1 + 83859 0.67 0.294176
Target:  5'- cCCCGCGGCaggaggCCCCgcggcaggaGGCCCCaCgGCAg -3'
miRNA:   3'- -GGGCGCCGg-----GGGG---------UCGGGGgGgCGUg -5'
33627 5' -70.5 NC_007605.1 + 34513 0.67 0.294176
Target:  5'- uCCCGgGGUCCagaguuCCCGGCUgCUCCCGCc- -3'
miRNA:   3'- -GGGCgCCGGG------GGGUCGG-GGGGGCGug -5'
33627 5' -70.5 NC_007605.1 + 34841 0.67 0.294176
Target:  5'- uCCCGCcuCCCaCCCgAGCCCCCUCaGCu- -3'
miRNA:   3'- -GGGCGccGGG-GGG-UCGGGGGGG-CGug -5'
33627 5' -70.5 NC_007605.1 + 16427 0.67 0.294176
Target:  5'- uCCCGCcuCCCaCCCgAGCCCCCUCaGCu- -3'
miRNA:   3'- -GGGCGccGGG-GGG-UCGGGGGGG-CGug -5'
33627 5' -70.5 NC_007605.1 + 22565 0.67 0.294176
Target:  5'- uCCCGCcuCCCaCCCgAGCCCCCUCaGCu- -3'
miRNA:   3'- -GGGCGccGGG-GGG-UCGGGGGGG-CGug -5'
33627 5' -70.5 NC_007605.1 + 13358 0.67 0.294176
Target:  5'- uCCCGCcuCCCaCCCgAGCCCCCUCaGCu- -3'
miRNA:   3'- -GGGCGccGGG-GGG-UCGGGGGGG-CGug -5'
33627 5' -70.5 NC_007605.1 + 31772 0.67 0.294176
Target:  5'- uCCCGCcuCCCaCCCgAGCCCCCUCaGCu- -3'
miRNA:   3'- -GGGCGccGGG-GGG-UCGGGGGGG-CGug -5'
33627 5' -70.5 NC_007605.1 + 25634 0.67 0.294176
Target:  5'- uCCCGCcuCCCaCCCgAGCCCCCUCaGCu- -3'
miRNA:   3'- -GGGCGccGGG-GGG-UCGGGGGGG-CGug -5'
33627 5' -70.5 NC_007605.1 + 28703 0.67 0.294176
Target:  5'- uCCCGCcuCCCaCCCgAGCCCCCUCaGCu- -3'
miRNA:   3'- -GGGCGccGGG-GGG-UCGGGGGGG-CGug -5'
33627 5' -70.5 NC_007605.1 + 60222 0.67 0.294176
Target:  5'- aUCCGCGaUgCCCCGGCUCUCCCugagggccgGCACc -3'
miRNA:   3'- -GGGCGCcGgGGGGUCGGGGGGG---------CGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.