miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33629 3' -57.4 NC_007605.1 + 140586 0.66 0.846606
Target:  5'- cUGGGGGGCUgaggGCGaCcgUCCgggcccGGAGGGu -3'
miRNA:   3'- -ACCCCCCGG----CGC-GuaAGGa-----CCUUUUu -5'
33629 3' -57.4 NC_007605.1 + 143655 0.66 0.846606
Target:  5'- cUGGGGGGCUgaggGCGaCcgUCCgggcccGGAGGGu -3'
miRNA:   3'- -ACCCCCCGG----CGC-GuaAGGa-----CCUUUUu -5'
33629 3' -57.4 NC_007605.1 + 146723 0.66 0.846606
Target:  5'- cUGGGGGGCUgaggGCGaCcgUCCgggcccGGAGGGu -3'
miRNA:   3'- -ACCCCCCGG----CGC-GuaAGGa-----CCUUUUu -5'
33629 3' -57.4 NC_007605.1 + 149792 0.66 0.846606
Target:  5'- cUGGGGGGCUgaggGCGaCcgUCCgggcccGGAGGGu -3'
miRNA:   3'- -ACCCCCCGG----CGC-GuaAGGa-----CCUUUUu -5'
33629 3' -57.4 NC_007605.1 + 152861 0.66 0.846606
Target:  5'- cUGGGGGGCUgaggGCGaCcgUCCgggcccGGAGGGu -3'
miRNA:   3'- -ACCCCCCGG----CGC-GuaAGGa-----CCUUUUu -5'
33629 3' -57.4 NC_007605.1 + 155930 0.66 0.846606
Target:  5'- cUGGGGGGCUgaggGCGaCcgUCCgggcccGGAGGGu -3'
miRNA:   3'- -ACCCCCCGG----CGC-GuaAGGa-----CCUUUUu -5'
33629 3' -57.4 NC_007605.1 + 158999 0.66 0.846606
Target:  5'- cUGGGGGGCUgaggGCGaCcgUCCgggcccGGAGGGu -3'
miRNA:   3'- -ACCCCCCGG----CGC-GuaAGGa-----CCUUUUu -5'
33629 3' -57.4 NC_007605.1 + 120919 0.67 0.786211
Target:  5'- aGGGGGGCCGgGaagaagCCgcGGAGAu- -3'
miRNA:   3'- aCCCCCCGGCgCguaa--GGa-CCUUUuu -5'
33629 3' -57.4 NC_007605.1 + 2118 0.68 0.748464
Target:  5'- cUGGGGGGCCGCGg------GGGAAGg -3'
miRNA:   3'- -ACCCCCCGGCGCguaaggaCCUUUUu -5'
33629 3' -57.4 NC_007605.1 + 1581 0.68 0.748464
Target:  5'- cUGGGGGGCCGCGg------GGGAAGg -3'
miRNA:   3'- -ACCCCCCGGCGCguaaggaCCUUUUu -5'
33629 3' -57.4 NC_007605.1 + 18811 0.74 0.423443
Target:  5'- -aGGGGGCuCG-GCAUUCCUaGGAGAAGg -3'
miRNA:   3'- acCCCCCG-GCgCGUAAGGA-CCUUUUU- -5'
33629 3' -57.4 NC_007605.1 + 117311 0.71 0.566619
Target:  5'- gGGGGcuGGCCGgGC--UUCUGGAAAAAa -3'
miRNA:   3'- aCCCC--CCGGCgCGuaAGGACCUUUUU- -5'
33629 3' -57.4 NC_007605.1 + 118084 0.7 0.617502
Target:  5'- cGGGGGGCaaggagacCGuCGCAga-CUGGAAAAGg -3'
miRNA:   3'- aCCCCCCG--------GC-GCGUaagGACCUUUUU- -5'
33629 3' -57.4 NC_007605.1 + 98025 0.7 0.627741
Target:  5'- cGGGGGGCguCGUGCuccccucgcUCCUGGAc--- -3'
miRNA:   3'- aCCCCCCG--GCGCGua-------AGGACCUuuuu -5'
33629 3' -57.4 NC_007605.1 + 70890 0.7 0.637984
Target:  5'- aGGGGcGuGCCGCGCGgggaaCCgGGGGAGAu -3'
miRNA:   3'- aCCCC-C-CGGCGCGUaa---GGaCCUUUUU- -5'
33629 3' -57.4 NC_007605.1 + 83277 0.7 0.648221
Target:  5'- gGGGGGGCgGCGgc-UCCUGGu---- -3'
miRNA:   3'- aCCCCCCGgCGCguaAGGACCuuuuu -5'
33629 3' -57.4 NC_007605.1 + 72346 0.68 0.709081
Target:  5'- aGGGGGGCgGCGUGgagCUGGGc--- -3'
miRNA:   3'- aCCCCCCGgCGCGUaagGACCUuuuu -5'
33629 3' -57.4 NC_007605.1 + 67034 0.68 0.738748
Target:  5'- aGGGcuGGGCUGCGCcucUCUGGAAGc- -3'
miRNA:   3'- aCCC--CCCGGCGCGuaaGGACCUUUuu -5'
33629 3' -57.4 NC_007605.1 + 521 0.68 0.748464
Target:  5'- cUGGGGGGCCGCGg------GGGAAGg -3'
miRNA:   3'- -ACCCCCCGGCGCguaaggaCCUUUUu -5'
33629 3' -57.4 NC_007605.1 + 1058 0.68 0.748464
Target:  5'- cUGGGGGGCCGCGg------GGGAAGg -3'
miRNA:   3'- -ACCCCCCGGCGCguaaggaCCUUUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.