miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33629 3' -57.4 NC_007605.1 + 169473 1.06 0.002931
Target:  5'- aUGGGGGGCCGCGCAUUCCUGGAAAAAg -3'
miRNA:   3'- -ACCCCCCGGCGCGUAAGGACCUUUUU- -5'
33629 3' -57.4 NC_007605.1 + 146906 0.66 0.836035
Target:  5'- aGGGGGGCUuuggguuccauuguGUGCccuUUCCUGGc---- -3'
miRNA:   3'- aCCCCCCGG--------------CGCGu--AAGGACCuuuuu -5'
33629 3' -57.4 NC_007605.1 + 168798 0.67 0.813096
Target:  5'- cGaGGGGGCCGuCGCGggCCcggUGGGc--- -3'
miRNA:   3'- aC-CCCCCGGC-GCGUaaGG---ACCUuuuu -5'
33629 3' -57.4 NC_007605.1 + 50538 0.68 0.752322
Target:  5'- cGGGGcGGCCaagccggaccccaggGCGgGUgCCUGGggGAu -3'
miRNA:   3'- aCCCC-CCGG---------------CGCgUAaGGACCuuUUu -5'
33629 3' -57.4 NC_007605.1 + 132230 0.7 0.637984
Target:  5'- aGGGGGGCCaGUGgGUgggcaCCUGGuAGAGg -3'
miRNA:   3'- aCCCCCCGG-CGCgUAa----GGACCuUUUU- -5'
33629 3' -57.4 NC_007605.1 + 53917 0.7 0.617502
Target:  5'- cGGGGGcuucGUCGCGUga-CCUGGAGAGGa -3'
miRNA:   3'- aCCCCC----CGGCGCGuaaGGACCUUUUU- -5'
33629 3' -57.4 NC_007605.1 + 40167 0.71 0.544546
Target:  5'- gGGGGGGCagugagggagggGCGUggUCCUGGGAc-- -3'
miRNA:   3'- aCCCCCCGg-----------CGCGuaAGGACCUUuuu -5'
33629 3' -57.4 NC_007605.1 + 85710 0.72 0.511016
Target:  5'- gGGGGGGCCuCGCAcucucccgucguuaUCUUGGAGAAu -3'
miRNA:   3'- aCCCCCCGGcGCGUa-------------AGGACCUUUUu -5'
33629 3' -57.4 NC_007605.1 + 171328 0.72 0.497457
Target:  5'- cGGGGGGCgGCGCGggagCCugcacgccguUGGAGGGu -3'
miRNA:   3'- aCCCCCCGgCGCGUaa--GG----------ACCUUUUu -5'
33629 3' -57.4 NC_007605.1 + 170790 0.72 0.497457
Target:  5'- cGGGGGGCgGCGCGggagCCugcacgccguUGGAGGGu -3'
miRNA:   3'- aCCCCCCGgCGCGUaa--GG----------ACCUUUUu -5'
33629 3' -57.4 NC_007605.1 + 170010 1.06 0.002931
Target:  5'- aUGGGGGGCCGCGCAUUCCUGGAAAAAg -3'
miRNA:   3'- -ACCCCCCGGCGCGUAAGGACCUUUUU- -5'
33629 3' -57.4 NC_007605.1 + 170533 1.06 0.002931
Target:  5'- aUGGGGGGCCGCGCAUUCCUGGAAAAAg -3'
miRNA:   3'- -ACCCCCCGGCGCGUAAGGACCUUUUU- -5'
33629 3' -57.4 NC_007605.1 + 171070 1.06 0.002931
Target:  5'- aUGGGGGGCCGCGCAUUCCUGGAAAAAg -3'
miRNA:   3'- -ACCCCCCGGCGCGUAAGGACCUUUUU- -5'
33629 3' -57.4 NC_007605.1 + 132404 0.74 0.414659
Target:  5'- cGGGcGGGCCG-GCcuccuUUCCUGGAAAu- -3'
miRNA:   3'- aCCC-CCCGGCgCGu----AAGGACCUUUuu -5'
33629 3' -57.4 NC_007605.1 + 169730 0.72 0.497457
Target:  5'- cGGGGGGCgGCGCGggagCCugcacgccguUGGAGGGu -3'
miRNA:   3'- aCCCCCCGgCGCGUaa--GG----------ACCUUUUu -5'
33629 3' -57.4 NC_007605.1 + 170268 0.72 0.497457
Target:  5'- cGGGGGGCgGCGCGggagCCugcacgccguUGGAGGGu -3'
miRNA:   3'- aCCCCCCGgCGCGUaa--GG----------ACCUUUUu -5'
33629 3' -57.4 NC_007605.1 + 34597 0.66 0.846606
Target:  5'- gGGGGuggaGGCUGCGCcugagcugCCUGGuGAGAa -3'
miRNA:   3'- aCCCC----CCGGCGCGuaa-----GGACCuUUUU- -5'
33629 3' -57.4 NC_007605.1 + 18811 0.74 0.423443
Target:  5'- -aGGGGGCuCG-GCAUUCCUaGGAGAAGg -3'
miRNA:   3'- acCCCCCG-GCgCGUAAGGA-CCUUUUU- -5'
33629 3' -57.4 NC_007605.1 + 117311 0.71 0.566619
Target:  5'- gGGGGcuGGCCGgGC--UUCUGGAAAAAa -3'
miRNA:   3'- aCCCC--CCGGCgCGuaAGGACCUUUUU- -5'
33629 3' -57.4 NC_007605.1 + 118084 0.7 0.617502
Target:  5'- cGGGGGGCaaggagacCGuCGCAga-CUGGAAAAGg -3'
miRNA:   3'- aCCCCCCG--------GC-GCGUaagGACCUUUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.