Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33629 | 3' | -57.4 | NC_007605.1 | + | 169473 | 1.06 | 0.002931 |
Target: 5'- aUGGGGGGCCGCGCAUUCCUGGAAAAAg -3' miRNA: 3'- -ACCCCCCGGCGCGUAAGGACCUUUUU- -5' |
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33629 | 3' | -57.4 | NC_007605.1 | + | 170010 | 1.06 | 0.002931 |
Target: 5'- aUGGGGGGCCGCGCAUUCCUGGAAAAAg -3' miRNA: 3'- -ACCCCCCGGCGCGUAAGGACCUUUUU- -5' |
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33629 | 3' | -57.4 | NC_007605.1 | + | 170533 | 1.06 | 0.002931 |
Target: 5'- aUGGGGGGCCGCGCAUUCCUGGAAAAAg -3' miRNA: 3'- -ACCCCCCGGCGCGUAAGGACCUUUUU- -5' |
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33629 | 3' | -57.4 | NC_007605.1 | + | 171070 | 1.06 | 0.002931 |
Target: 5'- aUGGGGGGCCGCGCAUUCCUGGAAAAAg -3' miRNA: 3'- -ACCCCCCGGCGCGUAAGGACCUUUUU- -5' |
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33629 | 3' | -57.4 | NC_007605.1 | + | 83314 | 0.74 | 0.388991 |
Target: 5'- cUGGGGGGCCG-GCGgcUCCUGGu---- -3' miRNA: 3'- -ACCCCCCGGCgCGUa-AGGACCuuuuu -5' |
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33629 | 3' | -57.4 | NC_007605.1 | + | 132404 | 0.74 | 0.414659 |
Target: 5'- cGGGcGGGCCG-GCcuccuUUCCUGGAAAu- -3' miRNA: 3'- aCCC-CCCGGCgCGu----AAGGACCUUUuu -5' |
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33629 | 3' | -57.4 | NC_007605.1 | + | 18811 | 0.74 | 0.423443 |
Target: 5'- -aGGGGGCuCG-GCAUUCCUaGGAGAAGg -3' miRNA: 3'- acCCCCCG-GCgCGUAAGGA-CCUUUUU- -5' |
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33629 | 3' | -57.4 | NC_007605.1 | + | 169730 | 0.72 | 0.497457 |
Target: 5'- cGGGGGGCgGCGCGggagCCugcacgccguUGGAGGGu -3' miRNA: 3'- aCCCCCCGgCGCGUaa--GG----------ACCUUUUu -5' |
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33629 | 3' | -57.4 | NC_007605.1 | + | 170790 | 0.72 | 0.497457 |
Target: 5'- cGGGGGGCgGCGCGggagCCugcacgccguUGGAGGGu -3' miRNA: 3'- aCCCCCCGgCGCGUaa--GG----------ACCUUUUu -5' |
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33629 | 3' | -57.4 | NC_007605.1 | + | 171328 | 0.72 | 0.497457 |
Target: 5'- cGGGGGGCgGCGCGggagCCugcacgccguUGGAGGGu -3' miRNA: 3'- aCCCCCCGgCGCGUaa--GG----------ACCUUUUu -5' |
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33629 | 3' | -57.4 | NC_007605.1 | + | 170268 | 0.72 | 0.497457 |
Target: 5'- cGGGGGGCgGCGCGggagCCugcacgccguUGGAGGGu -3' miRNA: 3'- aCCCCCCGgCGCGUaa--GG----------ACCUUUUu -5' |
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33629 | 3' | -57.4 | NC_007605.1 | + | 85710 | 0.72 | 0.511016 |
Target: 5'- gGGGGGGCCuCGCAcucucccgucguuaUCUUGGAGAAu -3' miRNA: 3'- aCCCCCCGGcGCGUa-------------AGGACCUUUUu -5' |
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33629 | 3' | -57.4 | NC_007605.1 | + | 40167 | 0.71 | 0.544546 |
Target: 5'- gGGGGGGCagugagggagggGCGUggUCCUGGGAc-- -3' miRNA: 3'- aCCCCCCGg-----------CGCGuaAGGACCUUuuu -5' |
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33629 | 3' | -57.4 | NC_007605.1 | + | 117311 | 0.71 | 0.566619 |
Target: 5'- gGGGGcuGGCCGgGC--UUCUGGAAAAAa -3' miRNA: 3'- aCCCC--CCGGCgCGuaAGGACCUUUUU- -5' |
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33629 | 3' | -57.4 | NC_007605.1 | + | 53917 | 0.7 | 0.617502 |
Target: 5'- cGGGGGcuucGUCGCGUga-CCUGGAGAGGa -3' miRNA: 3'- aCCCCC----CGGCGCGuaaGGACCUUUUU- -5' |
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33629 | 3' | -57.4 | NC_007605.1 | + | 118084 | 0.7 | 0.617502 |
Target: 5'- cGGGGGGCaaggagacCGuCGCAga-CUGGAAAAGg -3' miRNA: 3'- aCCCCCCG--------GC-GCGUaagGACCUUUUU- -5' |
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33629 | 3' | -57.4 | NC_007605.1 | + | 98025 | 0.7 | 0.627741 |
Target: 5'- cGGGGGGCguCGUGCuccccucgcUCCUGGAc--- -3' miRNA: 3'- aCCCCCCG--GCGCGua-------AGGACCUuuuu -5' |
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33629 | 3' | -57.4 | NC_007605.1 | + | 132230 | 0.7 | 0.637984 |
Target: 5'- aGGGGGGCCaGUGgGUgggcaCCUGGuAGAGg -3' miRNA: 3'- aCCCCCCGG-CGCgUAa----GGACCuUUUU- -5' |
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33629 | 3' | -57.4 | NC_007605.1 | + | 70890 | 0.7 | 0.637984 |
Target: 5'- aGGGGcGuGCCGCGCGgggaaCCgGGGGAGAu -3' miRNA: 3'- aCCCC-C-CGGCGCGUaa---GGaCCUUUUU- -5' |
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33629 | 3' | -57.4 | NC_007605.1 | + | 83277 | 0.7 | 0.648221 |
Target: 5'- gGGGGGGCgGCGgc-UCCUGGu---- -3' miRNA: 3'- aCCCCCCGgCGCguaAGGACCuuuuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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