miRNA display CGI


Results 21 - 40 of 426 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33629 5' -67.6 NC_007605.1 + 31434 0.66 0.423639
Target:  5'- cGGCag-CCCggGCGGCCCCagaGGCCg -3'
miRNA:   3'- -CCGgaaGGGggCGCCGGGGgg-UCGGg -5'
33629 5' -67.6 NC_007605.1 + 163024 0.66 0.43998
Target:  5'- aGGUCccCUCCUGCaGGgUCCCCAGgCCg -3'
miRNA:   3'- -CCGGaaGGGGGCG-CCgGGGGGUCgGG- -5'
33629 5' -67.6 NC_007605.1 + 35444 0.66 0.426067
Target:  5'- cGGCCacgUCCCCgGCcucccgcucggguaaGuGCUuuuucauuuuuagCCCCAGCCCc -3'
miRNA:   3'- -CCGGa--AGGGGgCG---------------C-CGG-------------GGGGUCGGG- -5'
33629 5' -67.6 NC_007605.1 + 22227 0.66 0.423639
Target:  5'- cGGCag-CCCggGCGGCCCCagaGGCCg -3'
miRNA:   3'- -CCGgaaGGGggCGCCGGGGgg-UCGGg -5'
33629 5' -67.6 NC_007605.1 + 25296 0.66 0.423639
Target:  5'- cGGCag-CCCggGCGGCCCCagaGGCCg -3'
miRNA:   3'- -CCGgaaGGGggCGCCGGGGgg-UCGGg -5'
33629 5' -67.6 NC_007605.1 + 68596 0.66 0.431764
Target:  5'- aGGCCagagacaCCCUCGCcuGCCauuCCCAGCCa -3'
miRNA:   3'- -CCGGaa-----GGGGGCGc-CGGg--GGGUCGGg -5'
33629 5' -67.6 NC_007605.1 + 16054 0.66 0.423639
Target:  5'- uGCCU--CCCCG-GGUCCCaggCCAGCCg -3'
miRNA:   3'- cCGGAagGGGGCgCCGGGG---GGUCGGg -5'
33629 5' -67.6 NC_007605.1 + 74122 0.66 0.448284
Target:  5'- cGGCCUcuggcaUCCCCCuGUGGCUguuUCUUAGCgCu -3'
miRNA:   3'- -CCGGA------AGGGGG-CGCCGG---GGGGUCGgG- -5'
33629 5' -67.6 NC_007605.1 + 27521 0.66 0.428503
Target:  5'- uGGCCacgCaCCCCG-GGCCaggccaccuuagaCCCGGCCa -3'
miRNA:   3'- -CCGGaa-G-GGGGCgCCGGg------------GGGUCGGg -5'
33629 5' -67.6 NC_007605.1 + 24452 0.66 0.428503
Target:  5'- uGGCCacgCaCCCCG-GGCCaggccaccuuagaCCCGGCCa -3'
miRNA:   3'- -CCGGaa-G-GGGGCgCCGGg------------GGGUCGGg -5'
33629 5' -67.6 NC_007605.1 + 19123 0.66 0.423639
Target:  5'- uGCCU--CCCCG-GGUCCCaggCCAGCCg -3'
miRNA:   3'- cCGGAagGGGGCgCCGGGG---GGUCGGg -5'
33629 5' -67.6 NC_007605.1 + 54033 0.66 0.43998
Target:  5'- uGCuCUUCCagcgCCCGgaccuCGGCCgCCUCGGCCUc -3'
miRNA:   3'- cCG-GAAGG----GGGC-----GCCGG-GGGGUCGGG- -5'
33629 5' -67.6 NC_007605.1 + 30590 0.66 0.428503
Target:  5'- uGGCCacgCaCCCCG-GGCCaggccaccuuagaCCCGGCCa -3'
miRNA:   3'- -CCGGaa-G-GGGGCgCCGGg------------GGGUCGGg -5'
33629 5' -67.6 NC_007605.1 + 48544 0.66 0.456674
Target:  5'- uGCCUg---CCGCgGGUCCCCgGGCCUa -3'
miRNA:   3'- cCGGAagggGGCG-CCGGGGGgUCGGG- -5'
33629 5' -67.6 NC_007605.1 + 12176 0.66 0.428503
Target:  5'- uGGCCacgCaCCCCG-GGCCaggccaccuuagaCCCGGCCa -3'
miRNA:   3'- -CCGGaa-G-GGGGCgCCGGg------------GGGUCGGg -5'
33629 5' -67.6 NC_007605.1 + 152676 0.66 0.423639
Target:  5'- gGGCCacgcUCCCCUGgGGCUucaugaUCCCAccGCCUu -3'
miRNA:   3'- -CCGGa---AGGGGGCgCCGG------GGGGU--CGGG- -5'
33629 5' -67.6 NC_007605.1 + 15245 0.66 0.428503
Target:  5'- uGGCCacgCaCCCCG-GGCCaggccaccuuagaCCCGGCCa -3'
miRNA:   3'- -CCGGaa-G-GGGGCgCCGGg------------GGGUCGGg -5'
33629 5' -67.6 NC_007605.1 + 75004 0.66 0.46856
Target:  5'- uGGCuCUUucacguccucuaCCCCgGCGGCCuCcacuaccuccucgacCCCGGCCUc -3'
miRNA:   3'- -CCG-GAA------------GGGGgCGCCGG-G---------------GGGUCGGG- -5'
33629 5' -67.6 NC_007605.1 + 135195 0.66 0.431764
Target:  5'- gGGCC-UCUgCCGgGaaGCCCaCCCGGgCCa -3'
miRNA:   3'- -CCGGaAGGgGGCgC--CGGG-GGGUCgGG- -5'
33629 5' -67.6 NC_007605.1 + 33659 0.66 0.428503
Target:  5'- uGGCCacgCaCCCCG-GGCCaggccaccuuagaCCCGGCCa -3'
miRNA:   3'- -CCGGaa-G-GGGGCgCCGGg------------GGGUCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.