miRNA display CGI


Results 1 - 20 of 426 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33629 5' -67.6 NC_007605.1 + 12985 0.66 0.423639
Target:  5'- uGCCU--CCCCG-GGUCCCaggCCAGCCg -3'
miRNA:   3'- cCGGAagGGGGCgCCGGGG---GGUCGGg -5'
33629 5' -67.6 NC_007605.1 + 35444 0.66 0.426067
Target:  5'- cGGCCacgUCCCCgGCcucccgcucggguaaGuGCUuuuucauuuuuagCCCCAGCCCc -3'
miRNA:   3'- -CCGGa--AGGGGgCG---------------C-CGG-------------GGGGUCGGG- -5'
33629 5' -67.6 NC_007605.1 + 19158 0.66 0.423639
Target:  5'- cGGCag-CCCggGCGGCCCCagaGGCCg -3'
miRNA:   3'- -CCGgaaGGGggCGCCGGGGgg-UCGGg -5'
33629 5' -67.6 NC_007605.1 + 31434 0.66 0.423639
Target:  5'- cGGCag-CCCggGCGGCCCCagaGGCCg -3'
miRNA:   3'- -CCGgaaGGGggCGCCGGGGgg-UCGGg -5'
33629 5' -67.6 NC_007605.1 + 28365 0.66 0.423639
Target:  5'- cGGCag-CCCggGCGGCCCCagaGGCCg -3'
miRNA:   3'- -CCGgaaGGGggCGCCGGGGgg-UCGGg -5'
33629 5' -67.6 NC_007605.1 + 31399 0.66 0.423639
Target:  5'- uGCCU--CCCCG-GGUCCCaggCCAGCCg -3'
miRNA:   3'- cCGGAagGGGGCgCCGGGG---GGUCGGg -5'
33629 5' -67.6 NC_007605.1 + 19123 0.66 0.423639
Target:  5'- uGCCU--CCCCG-GGUCCCaggCCAGCCg -3'
miRNA:   3'- cCGGAagGGGGCgCCGGGG---GGUCGGg -5'
33629 5' -67.6 NC_007605.1 + 153974 0.66 0.423639
Target:  5'- aGGCCUUggCCCgCUccaacaucguGCGGCCCUgCAGCg- -3'
miRNA:   3'- -CCGGAA--GGG-GG----------CGCCGGGGgGUCGgg -5'
33629 5' -67.6 NC_007605.1 + 75004 0.66 0.46856
Target:  5'- uGGCuCUUucacguccucuaCCCCgGCGGCCuCcacuaccuccucgacCCCGGCCUc -3'
miRNA:   3'- -CCG-GAA------------GGGGgCGCCGG-G---------------GGGUCGGG- -5'
33629 5' -67.6 NC_007605.1 + 22192 0.66 0.423639
Target:  5'- uGCCU--CCCCG-GGUCCCaggCCAGCCg -3'
miRNA:   3'- cCGGAagGGGGCgCCGGGG---GGUCGGg -5'
33629 5' -67.6 NC_007605.1 + 152676 0.66 0.423639
Target:  5'- gGGCCacgcUCCCCUGgGGCUucaugaUCCCAccGCCUu -3'
miRNA:   3'- -CCGGa---AGGGGGCgCCGG------GGGGU--CGGG- -5'
33629 5' -67.6 NC_007605.1 + 34468 0.66 0.423639
Target:  5'- uGCCU--CCCCG-GGUCCCaggCCAGCCg -3'
miRNA:   3'- cCGGAagGGGGCgCCGGGG---GGUCGGg -5'
33629 5' -67.6 NC_007605.1 + 28330 0.66 0.423639
Target:  5'- uGCCU--CCCCG-GGUCCCaggCCAGCCg -3'
miRNA:   3'- cCGGAagGGGGCgCCGGGG---GGUCGGg -5'
33629 5' -67.6 NC_007605.1 + 16089 0.66 0.423639
Target:  5'- cGGCag-CCCggGCGGCCCCagaGGCCg -3'
miRNA:   3'- -CCGgaaGGGggCGCCGGGGgg-UCGGg -5'
33629 5' -67.6 NC_007605.1 + 22227 0.66 0.423639
Target:  5'- cGGCag-CCCggGCGGCCCCagaGGCCg -3'
miRNA:   3'- -CCGgaaGGGggCGCCGGGGgg-UCGGg -5'
33629 5' -67.6 NC_007605.1 + 25296 0.66 0.423639
Target:  5'- cGGCag-CCCggGCGGCCCCagaGGCCg -3'
miRNA:   3'- -CCGgaaGGGggCGCCGGGGgg-UCGGg -5'
33629 5' -67.6 NC_007605.1 + 97176 0.66 0.423639
Target:  5'- cGUC-UCCCCUuuggaaUGGCCCcuggaCCCGGCCCa -3'
miRNA:   3'- cCGGaAGGGGGc-----GCCGGG-----GGGUCGGG- -5'
33629 5' -67.6 NC_007605.1 + 16054 0.66 0.423639
Target:  5'- uGCCU--CCCCG-GGUCCCaggCCAGCCg -3'
miRNA:   3'- cCGGAagGGGGCgCCGGGG---GGUCGGg -5'
33629 5' -67.6 NC_007605.1 + 34503 0.66 0.423639
Target:  5'- cGGCag-CCCggGCGGCCCCagaGGCCg -3'
miRNA:   3'- -CCGgaaGGGggCGCCGGGGgg-UCGGg -5'
33629 5' -67.6 NC_007605.1 + 25261 0.66 0.423639
Target:  5'- uGCCU--CCCCG-GGUCCCaggCCAGCCg -3'
miRNA:   3'- cCGGAagGGGGCgCCGGGG---GGUCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.