Results 1 - 20 of 426 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33629 | 5' | -67.6 | NC_007605.1 | + | 42 | 0.68 | 0.354842 |
Target: 5'- cGCCaacacccCCCCCGauGCCCCCCgggGGUCUu -3' miRNA: 3'- cCGGaa-----GGGGGCgcCGGGGGG---UCGGG- -5' |
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33629 | 5' | -67.6 | NC_007605.1 | + | 297 | 0.73 | 0.149978 |
Target: 5'- cGGCgUgcaggCUCCCGCGccGCCCCCCGcucccGCCCc -3' miRNA: 3'- -CCGgAa----GGGGGCGC--CGGGGGGU-----CGGG- -5' |
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33629 | 5' | -67.6 | NC_007605.1 | + | 383 | 0.74 | 0.139768 |
Target: 5'- uGGCUgcgCCCgCGCGGCgCCCCCcGaCCCc -3' miRNA: 3'- -CCGGaa-GGGgGCGCCG-GGGGGuC-GGG- -5' |
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33629 | 5' | -67.6 | NC_007605.1 | + | 435 | 0.72 | 0.18059 |
Target: 5'- cGCCaUCCaccgCCCGCaGCCCCCgGaGCCCg -3' miRNA: 3'- cCGGaAGG----GGGCGcCGGGGGgU-CGGG- -5' |
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33629 | 5' | -67.6 | NC_007605.1 | + | 467 | 0.66 | 0.43998 |
Target: 5'- cGGaCCccgacCCCCCGCcGCCCgCCC-GCCg -3' miRNA: 3'- -CC-GGaa---GGGGGCGcCGGG-GGGuCGGg -5' |
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33629 | 5' | -67.6 | NC_007605.1 | + | 539 | 0.76 | 0.106027 |
Target: 5'- aGGCCacgcccccuccacuuUUUCCaggaaugCGCGGCCCCCCAuGCCCc -3' miRNA: 3'- -CCGG---------------AAGGGg------GCGCCGGGGGGU-CGGG- -5' |
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33629 | 5' | -67.6 | NC_007605.1 | + | 835 | 0.73 | 0.149978 |
Target: 5'- cGGCgUgcaggCUCCCGCGccGCCCCCCGcucccGCCCc -3' miRNA: 3'- -CCGgAa----GGGGGCGC--CGGGGGGU-----CGGG- -5' |
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33629 | 5' | -67.6 | NC_007605.1 | + | 921 | 0.74 | 0.139768 |
Target: 5'- uGGCUgcgCCCgCGCGGCgCCCCCcGaCCCc -3' miRNA: 3'- -CCGGaa-GGGgGCGCCG-GGGGGuC-GGG- -5' |
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33629 | 5' | -67.6 | NC_007605.1 | + | 973 | 0.78 | 0.072951 |
Target: 5'- cGCCaUCCaccgCCCGCaGCCCCCgGGCCCg -3' miRNA: 3'- cCGGaAGG----GGGCGcCGGGGGgUCGGG- -5' |
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33629 | 5' | -67.6 | NC_007605.1 | + | 1004 | 0.66 | 0.43998 |
Target: 5'- cGGaCCccgacCCCCCGCcGCCCgCCC-GCCg -3' miRNA: 3'- -CC-GGaa---GGGGGCGcCGGG-GGGuCGGg -5' |
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33629 | 5' | -67.6 | NC_007605.1 | + | 1076 | 0.76 | 0.106027 |
Target: 5'- aGGCCacgcccccuccacuuUUUCCaggaaugCGCGGCCCCCCAuGCCCc -3' miRNA: 3'- -CCGG---------------AAGGGg------GCGCCGGGGGGU-CGGG- -5' |
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33629 | 5' | -67.6 | NC_007605.1 | + | 1357 | 0.73 | 0.149978 |
Target: 5'- cGGCgUgcaggCUCCCGCGccGCCCCCCGcucccGCCCc -3' miRNA: 3'- -CCGgAa----GGGGGCGC--CGGGGGGU-----CGGG- -5' |
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33629 | 5' | -67.6 | NC_007605.1 | + | 1443 | 0.74 | 0.139768 |
Target: 5'- uGGCUgcgCCCgCGCGGCgCCCCCcGaCCCc -3' miRNA: 3'- -CCGGaa-GGGgGCGCCG-GGGGGuC-GGG- -5' |
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33629 | 5' | -67.6 | NC_007605.1 | + | 1495 | 0.72 | 0.18059 |
Target: 5'- cGCCaUCCaccgCCCGCaGCCCCCgGaGCCCg -3' miRNA: 3'- cCGGaAGG----GGGCGcCGGGGGgU-CGGG- -5' |
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33629 | 5' | -67.6 | NC_007605.1 | + | 1527 | 0.66 | 0.43998 |
Target: 5'- cGGaCCccgacCCCCCGCcGCCCgCCC-GCCg -3' miRNA: 3'- -CC-GGaa---GGGGGCGcCGGG-GGGuCGGg -5' |
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33629 | 5' | -67.6 | NC_007605.1 | + | 1599 | 0.76 | 0.106027 |
Target: 5'- aGGCCacgcccccuccacuuUUUCCaggaaugCGCGGCCCCCCAuGCCCc -3' miRNA: 3'- -CCGG---------------AAGGGg------GCGCCGGGGGGU-CGGG- -5' |
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33629 | 5' | -67.6 | NC_007605.1 | + | 1881 | 0.66 | 0.456674 |
Target: 5'- cGGCCUagaCCCGgGGCCCCUgAuuGCUg -3' miRNA: 3'- -CCGGAaggGGGCgCCGGGGGgU--CGGg -5' |
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33629 | 5' | -67.6 | NC_007605.1 | + | 1895 | 0.73 | 0.149978 |
Target: 5'- cGGCgUgcaggCUCCCGCGccGCCCCCCGcucccGCCCc -3' miRNA: 3'- -CCGgAa----GGGGGCGC--CGGGGGGU-----CGGG- -5' |
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33629 | 5' | -67.6 | NC_007605.1 | + | 1981 | 0.76 | 0.105012 |
Target: 5'- uGGCUgcgCCCgCGCGcGCCCCCCGaCCCc -3' miRNA: 3'- -CCGGaa-GGGgGCGC-CGGGGGGUcGGG- -5' |
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33629 | 5' | -67.6 | NC_007605.1 | + | 2032 | 0.72 | 0.18059 |
Target: 5'- cGCCaUCCaccgCCCGCaGCCCCCgGaGCCCg -3' miRNA: 3'- cCGGaAGG----GGGCGcCGGGGGgU-CGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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