miRNA display CGI


Results 1 - 20 of 426 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33629 5' -67.6 NC_007605.1 + 169512 1.1 0.000281
Target:  5'- uGGCCUUCCCCCGCGGCCCCCCAGCCCc -3'
miRNA:   3'- -CCGGAAGGGGGCGCCGGGGGGUCGGG- -5'
33629 5' -67.6 NC_007605.1 + 170049 1.1 0.000281
Target:  5'- uGGCCUUCCCCCGCGGCCCCCCAGCCCc -3'
miRNA:   3'- -CCGGAAGGGGGCGCCGGGGGGUCGGG- -5'
33629 5' -67.6 NC_007605.1 + 170572 1.1 0.000281
Target:  5'- uGGCCUUCCCCCGCGGCCCCCCAGCCCc -3'
miRNA:   3'- -CCGGAAGGGGGCGCCGGGGGGUCGGG- -5'
33629 5' -67.6 NC_007605.1 + 171109 1.1 0.000281
Target:  5'- uGGCCUUCCCCCGCGGCCCCCCAGCCCc -3'
miRNA:   3'- -CCGGAAGGGGGCGCCGGGGGGUCGGG- -5'
33629 5' -67.6 NC_007605.1 + 113574 0.86 0.01852
Target:  5'- cGGCCccggCCUCCGCGGCCCCggccuCCAGCCCu -3'
miRNA:   3'- -CCGGaa--GGGGGCGCCGGGG-----GGUCGGG- -5'
33629 5' -67.6 NC_007605.1 + 113514 0.8 0.052833
Target:  5'- cGGCCccggCCUCCGCGGCCccggccuccgcggCCCCGGCCUc -3'
miRNA:   3'- -CCGGaa--GGGGGCGCCGG-------------GGGGUCGGG- -5'
33629 5' -67.6 NC_007605.1 + 973 0.78 0.072951
Target:  5'- cGCCaUCCaccgCCCGCaGCCCCCgGGCCCg -3'
miRNA:   3'- cCGGaAGG----GGGCGcCGGGGGgUCGGG- -5'
33629 5' -67.6 NC_007605.1 + 50700 0.78 0.074759
Target:  5'- gGGCCgaaUCUCCGCGGCUucuUCCCGGCCCc -3'
miRNA:   3'- -CCGGaa-GGGGGCGCCGG---GGGGUCGGG- -5'
33629 5' -67.6 NC_007605.1 + 165490 0.77 0.078504
Target:  5'- uGGCCagcUgCCCCGUGGCCCacaCCuGCCCa -3'
miRNA:   3'- -CCGGa--AgGGGGCGCCGGGg--GGuCGGG- -5'
33629 5' -67.6 NC_007605.1 + 159766 0.77 0.079274
Target:  5'- aGCCUUgCCCCCGCcagcgccuccucgcaGGCCCCCC-GCaCCa -3'
miRNA:   3'- cCGGAA-GGGGGCG---------------CCGGGGGGuCG-GG- -5'
33629 5' -67.6 NC_007605.1 + 151115 0.77 0.090844
Target:  5'- aGCCUgCCCCUcgGCGGCCcgugCCCCAGCuCCg -3'
miRNA:   3'- cCGGAaGGGGG--CGCCGG----GGGGUCG-GG- -5'
33629 5' -67.6 NC_007605.1 + 1981 0.76 0.105012
Target:  5'- uGGCUgcgCCCgCGCGcGCCCCCCGaCCCc -3'
miRNA:   3'- -CCGGaa-GGGgGCGC-CGGGGGGUcGGG- -5'
33629 5' -67.6 NC_007605.1 + 1599 0.76 0.106027
Target:  5'- aGGCCacgcccccuccacuuUUUCCaggaaugCGCGGCCCCCCAuGCCCc -3'
miRNA:   3'- -CCGG---------------AAGGGg------GCGCCGGGGGGU-CGGG- -5'
33629 5' -67.6 NC_007605.1 + 539 0.76 0.106027
Target:  5'- aGGCCacgcccccuccacuuUUUCCaggaaugCGCGGCCCCCCAuGCCCc -3'
miRNA:   3'- -CCGG---------------AAGGGg------GCGCCGGGGGGU-CGGG- -5'
33629 5' -67.6 NC_007605.1 + 2136 0.76 0.106027
Target:  5'- aGGCCacgcccccuccacuuUUUCCaggaaugCGCGGCCCCCCAuGCCCc -3'
miRNA:   3'- -CCGG---------------AAGGGg------GCGCCGGGGGGU-CGGG- -5'
33629 5' -67.6 NC_007605.1 + 1076 0.76 0.106027
Target:  5'- aGGCCacgcccccuccacuuUUUCCaggaaugCGCGGCCCCCCAuGCCCc -3'
miRNA:   3'- -CCGG---------------AAGGGg------GCGCCGGGGGGU-CGGG- -5'
33629 5' -67.6 NC_007605.1 + 137044 0.75 0.115585
Target:  5'- aGCCUccaCCCCCGggcacacaGGCCCCCgaAGCCCa -3'
miRNA:   3'- cCGGAa--GGGGGCg-------CCGGGGGg-UCGGG- -5'
33629 5' -67.6 NC_007605.1 + 100725 0.75 0.117535
Target:  5'- cGCCcccaucucccccggUUCCCCgCGCGGCaCgCCCCuGCCCg -3'
miRNA:   3'- cCGG--------------AAGGGG-GCGCCG-G-GGGGuCGGG- -5'
33629 5' -67.6 NC_007605.1 + 134680 0.75 0.121237
Target:  5'- uGGCC-UCCCCgGUGGCCCCaagcugagCCAGUUCc -3'
miRNA:   3'- -CCGGaAGGGGgCGCCGGGG--------GGUCGGG- -5'
33629 5' -67.6 NC_007605.1 + 61507 0.74 0.136509
Target:  5'- cGGCC-UCCgCCCGCagguaGGCCgCCCGGgCCa -3'
miRNA:   3'- -CCGGaAGG-GGGCG-----CCGGgGGGUCgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.