miRNA display CGI


Results 1 - 20 of 426 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33629 5' -67.6 NC_007605.1 + 33528 0.73 0.166182
Target:  5'- cGGCCUcagcaacccugcugcUCCCCUcCuGCCaCCCCAGCCUc -3'
miRNA:   3'- -CCGGA---------------AGGGGGcGcCGG-GGGGUCGGG- -5'
33629 5' -67.6 NC_007605.1 + 61987 0.73 0.149978
Target:  5'- gGGCgUuugUCCCCCGCuGGCCUCCgCGuacacGCCCa -3'
miRNA:   3'- -CCGgA---AGGGGGCG-CCGGGGG-GU-----CGGG- -5'
33629 5' -67.6 NC_007605.1 + 12045 0.73 0.166182
Target:  5'- cGGCCUcagcaacccugcugcUCCCCUcCuGCCaCCCCAGCCUc -3'
miRNA:   3'- -CCGGA---------------AGGGGGcGcCGG-GGGGUCGGG- -5'
33629 5' -67.6 NC_007605.1 + 15114 0.73 0.166182
Target:  5'- cGGCCUcagcaacccugcugcUCCCCUcCuGCCaCCCCAGCCUc -3'
miRNA:   3'- -CCGGA---------------AGGGGGcGcCGG-GGGGUCGGG- -5'
33629 5' -67.6 NC_007605.1 + 18183 0.73 0.166182
Target:  5'- cGGCCUcagcaacccugcugcUCCCCUcCuGCCaCCCCAGCCUc -3'
miRNA:   3'- -CCGGA---------------AGGGGGcGcCGG-GGGGUCGGG- -5'
33629 5' -67.6 NC_007605.1 + 21252 0.73 0.166182
Target:  5'- cGGCCUcagcaacccugcugcUCCCCUcCuGCCaCCCCAGCCUc -3'
miRNA:   3'- -CCGGA---------------AGGGGGcGcCGG-GGGGUCGGG- -5'
33629 5' -67.6 NC_007605.1 + 24321 0.73 0.166182
Target:  5'- cGGCCUcagcaacccugcugcUCCCCUcCuGCCaCCCCAGCCUc -3'
miRNA:   3'- -CCGGA---------------AGGGGGcGcCGG-GGGGUCGGG- -5'
33629 5' -67.6 NC_007605.1 + 27390 0.73 0.166182
Target:  5'- cGGCCUcagcaacccugcugcUCCCCUcCuGCCaCCCCAGCCUc -3'
miRNA:   3'- -CCGGA---------------AGGGGGcGcCGG-GGGGUCGGG- -5'
33629 5' -67.6 NC_007605.1 + 30459 0.73 0.166182
Target:  5'- cGGCCUcagcaacccugcugcUCCCCUcCuGCCaCCCCAGCCUc -3'
miRNA:   3'- -CCGGA---------------AGGGGGcGcCGG-GGGGUCGGG- -5'
33629 5' -67.6 NC_007605.1 + 150846 0.74 0.141092
Target:  5'- gGGCCUUCaugggCCCGCuuucuaccucucuccGGCaCCCCAGCCUg -3'
miRNA:   3'- -CCGGAAGg----GGGCG---------------CCGgGGGGUCGGG- -5'
33629 5' -67.6 NC_007605.1 + 61507 0.74 0.136509
Target:  5'- cGGCC-UCCgCCCGCagguaGGCCgCCCGGgCCa -3'
miRNA:   3'- -CCGGaAGG-GGGCG-----CCGGgGGGUCgGG- -5'
33629 5' -67.6 NC_007605.1 + 134680 0.75 0.121237
Target:  5'- uGGCC-UCCCCgGUGGCCCCaagcugagCCAGUUCc -3'
miRNA:   3'- -CCGGaAGGGGgCGCCGGGG--------GGUCGGG- -5'
33629 5' -67.6 NC_007605.1 + 170049 1.1 0.000281
Target:  5'- uGGCCUUCCCCCGCGGCCCCCCAGCCCc -3'
miRNA:   3'- -CCGGAAGGGGGCGCCGGGGGGUCGGG- -5'
33629 5' -67.6 NC_007605.1 + 170572 1.1 0.000281
Target:  5'- uGGCCUUCCCCCGCGGCCCCCCAGCCCc -3'
miRNA:   3'- -CCGGAAGGGGGCGCCGGGGGGUCGGG- -5'
33629 5' -67.6 NC_007605.1 + 171109 1.1 0.000281
Target:  5'- uGGCCUUCCCCCGCGGCCCCCCAGCCCc -3'
miRNA:   3'- -CCGGAAGGGGGCGCCGGGGGGUCGGG- -5'
33629 5' -67.6 NC_007605.1 + 50700 0.78 0.074759
Target:  5'- gGGCCgaaUCUCCGCGGCUucuUCCCGGCCCc -3'
miRNA:   3'- -CCGGaa-GGGGGCGCCGG---GGGGUCGGG- -5'
33629 5' -67.6 NC_007605.1 + 159766 0.77 0.079274
Target:  5'- aGCCUUgCCCCCGCcagcgccuccucgcaGGCCCCCC-GCaCCa -3'
miRNA:   3'- cCGGAA-GGGGGCG---------------CCGGGGGGuCG-GG- -5'
33629 5' -67.6 NC_007605.1 + 151115 0.77 0.090844
Target:  5'- aGCCUgCCCCUcgGCGGCCcgugCCCCAGCuCCg -3'
miRNA:   3'- cCGGAaGGGGG--CGCCGG----GGGGUCG-GG- -5'
33629 5' -67.6 NC_007605.1 + 137044 0.75 0.115585
Target:  5'- aGCCUccaCCCCCGggcacacaGGCCCCCgaAGCCCa -3'
miRNA:   3'- cCGGAa--GGGGGCg-------CCGGGGGg-UCGGG- -5'
33629 5' -67.6 NC_007605.1 + 100725 0.75 0.117535
Target:  5'- cGCCcccaucucccccggUUCCCCgCGCGGCaCgCCCCuGCCCg -3'
miRNA:   3'- cCGG--------------AAGGGG-GCGCCG-G-GGGGuCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.