miRNA display CGI


Results 1 - 20 of 284 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33631 5' -54.4 NC_007605.1 + 121510 0.66 0.950293
Target:  5'- -uCACAGGUGGCCUgcuggccgUGGCAGAGuCCUg -3'
miRNA:   3'- cuGUGUCCGUUGGG--------ACUGUUUCcGGG- -5'
33631 5' -54.4 NC_007605.1 + 169900 0.66 0.941431
Target:  5'- gGGCuccgGGGUGACCCagccaagcgUGACcaAGGGGCCCg -3'
miRNA:   3'- -CUGug--UCCGUUGGG---------ACUG--UUUCCGGG- -5'
33631 5' -54.4 NC_007605.1 + 160492 0.66 0.950293
Target:  5'- -cCAgGGGCGAgCagcgcGGCAGAGGCCUc -3'
miRNA:   3'- cuGUgUCCGUUgGga---CUGUUUCCGGG- -5'
33631 5' -54.4 NC_007605.1 + 171498 0.66 0.941431
Target:  5'- gGGCuccgGGGUGACCCagccaagcgUGACcaAGGGGCCCg -3'
miRNA:   3'- -CUGug--UCCGUUGGG---------ACUG--UUUCCGGG- -5'
33631 5' -54.4 NC_007605.1 + 3657 0.66 0.950293
Target:  5'- uGGCACA-GCAGCCCgGGgu-AGGUCCc -3'
miRNA:   3'- -CUGUGUcCGUUGGGaCUguuUCCGGG- -5'
33631 5' -54.4 NC_007605.1 + 55256 0.66 0.959686
Target:  5'- -uUACAGGCAACUacaUGgggccGCAuuuccagccggcgcuGAGGCCCu -3'
miRNA:   3'- cuGUGUCCGUUGGg--AC-----UGU---------------UUCCGGG- -5'
33631 5' -54.4 NC_007605.1 + 108999 0.66 0.950293
Target:  5'- uGGCAgcUAGGCugucuGCCaccaggucaUGACcGGGGCCCa -3'
miRNA:   3'- -CUGU--GUCCGu----UGGg--------ACUGuUUCCGGG- -5'
33631 5' -54.4 NC_007605.1 + 91744 0.66 0.945982
Target:  5'- aGGCGCGGGgccuCGGCCCUGGCcucuuCCCg -3'
miRNA:   3'- -CUGUGUCC----GUUGGGACUGuuuccGGG- -5'
33631 5' -54.4 NC_007605.1 + 63321 0.66 0.941431
Target:  5'- cGAgGCAGGUggGGgCCUGACGcggauGGCCa -3'
miRNA:   3'- -CUgUGUCCG--UUgGGACUGUuu---CCGGg -5'
33631 5' -54.4 NC_007605.1 + 147431 0.66 0.941431
Target:  5'- cACAcCAGGCugacuGCCUUaGCAGuguGGCCCu -3'
miRNA:   3'- cUGU-GUCCGu----UGGGAcUGUUu--CCGGG- -5'
33631 5' -54.4 NC_007605.1 + 96877 0.66 0.941431
Target:  5'- -cCGCAGauGACCCaGGaGAAGGCCCa -3'
miRNA:   3'- cuGUGUCcgUUGGGaCUgUUUCCGGG- -5'
33631 5' -54.4 NC_007605.1 + 96749 0.66 0.950293
Target:  5'- cGCGCAGGCc-CCCUccagguaGAAGGCCa -3'
miRNA:   3'- cUGUGUCCGuuGGGAcug----UUUCCGGg -5'
33631 5' -54.4 NC_007605.1 + 54216 0.66 0.950293
Target:  5'- gGAgGCAGGUuAgCCUGGCcuGGGUCa -3'
miRNA:   3'- -CUgUGUCCGuUgGGACUGuuUCCGGg -5'
33631 5' -54.4 NC_007605.1 + 2026 0.66 0.950293
Target:  5'- aACACuuGGGCAcggagaguGCCCUGG---AGGCCUc -3'
miRNA:   3'- cUGUG--UCCGU--------UGGGACUguuUCCGGG- -5'
33631 5' -54.4 NC_007605.1 + 134665 0.66 0.941431
Target:  5'- uGACGCuGGGCua-CCUGGCcuccccgguGGCCCc -3'
miRNA:   3'- -CUGUG-UCCGuugGGACUGuuu------CCGGG- -5'
33631 5' -54.4 NC_007605.1 + 59582 0.66 0.950293
Target:  5'- gGugACAGGU--CCC-GGCu--GGCCCg -3'
miRNA:   3'- -CugUGUCCGuuGGGaCUGuuuCCGGG- -5'
33631 5' -54.4 NC_007605.1 + 85455 0.66 0.950293
Target:  5'- --gGCuGGCAGCCUUcACcAGGGUCCg -3'
miRNA:   3'- cugUGuCCGUUGGGAcUGuUUCCGGG- -5'
33631 5' -54.4 NC_007605.1 + 170438 0.66 0.941431
Target:  5'- gGGCuccgGGGUGACCCagccaagcgUGACcaAGGGGCCCg -3'
miRNA:   3'- -CUGug--UCCGUUGGG---------ACUG--UUUCCGGG- -5'
33631 5' -54.4 NC_007605.1 + 170960 0.66 0.941431
Target:  5'- gGGCuccgGGGUGACCCagccaagcgUGACcaAGGGGCCCg -3'
miRNA:   3'- -CUGug--UCCGUUGGG---------ACUG--UUUCCGGG- -5'
33631 5' -54.4 NC_007605.1 + 120225 0.66 0.945537
Target:  5'- gGAC-CAGGCGcauacugGCCCUgGGCAGcaGGGUCa -3'
miRNA:   3'- -CUGuGUCCGU-------UGGGA-CUGUU--UCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.