miRNA display CGI


Results 1 - 20 of 284 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33631 5' -54.4 NC_007605.1 + 105356 0.72 0.674519
Target:  5'- cACGgGGGCGcCCCUGGCAGagagguggcagcGGGCCa -3'
miRNA:   3'- cUGUgUCCGUuGGGACUGUU------------UCCGGg -5'
33631 5' -54.4 NC_007605.1 + 24652 0.74 0.591983
Target:  5'- aGAgACAGGCAggGCCCcccGGCAGcuGGCCCc -3'
miRNA:   3'- -CUgUGUCCGU--UGGGa--CUGUUu-CCGGG- -5'
33631 5' -54.4 NC_007605.1 + 27721 0.74 0.591983
Target:  5'- aGAgACAGGCAggGCCCcccGGCAGcuGGCCCc -3'
miRNA:   3'- -CUgUGUCCGU--UGGGa--CUGUUu-CCGGG- -5'
33631 5' -54.4 NC_007605.1 + 30790 0.74 0.591983
Target:  5'- aGAgACAGGCAggGCCCcccGGCAGcuGGCCCc -3'
miRNA:   3'- -CUgUGUCCGU--UGGGa--CUGUUu-CCGGG- -5'
33631 5' -54.4 NC_007605.1 + 33859 0.74 0.591983
Target:  5'- aGAgACAGGCAggGCCCcccGGCAGcuGGCCCc -3'
miRNA:   3'- -CUgUGUCCGU--UGGGa--CUGUUu-CCGGG- -5'
33631 5' -54.4 NC_007605.1 + 159261 0.74 0.591983
Target:  5'- cGGCGCgccuguccucccAGG-GACCCgaGACGAAGGCCCg -3'
miRNA:   3'- -CUGUG------------UCCgUUGGGa-CUGUUUCCGGG- -5'
33631 5' -54.4 NC_007605.1 + 72298 0.73 0.622922
Target:  5'- aGAUGCAGGagcuGACCCaGGCGAcgagauccAGGCCCa -3'
miRNA:   3'- -CUGUGUCCg---UUGGGaCUGUU--------UCCGGG- -5'
33631 5' -54.4 NC_007605.1 + 66358 0.73 0.643597
Target:  5'- cGGCGCAGGUugcggGGCCggUUGACAucaugagcaAGGGCCCa -3'
miRNA:   3'- -CUGUGUCCG-----UUGG--GACUGU---------UUCCGGG- -5'
33631 5' -54.4 NC_007605.1 + 162028 0.73 0.664235
Target:  5'- cGCACAGGCAGCCgCcGGCcguacacccGGCCCu -3'
miRNA:   3'- cUGUGUCCGUUGG-GaCUGuuu------CCGGG- -5'
33631 5' -54.4 NC_007605.1 + 21583 0.74 0.591983
Target:  5'- aGAgACAGGCAggGCCCcccGGCAGcuGGCCCc -3'
miRNA:   3'- -CUgUGUCCGU--UGGGa--CUGUUu-CCGGG- -5'
33631 5' -54.4 NC_007605.1 + 18514 0.74 0.591983
Target:  5'- aGAgACAGGCAggGCCCcccGGCAGcuGGCCCc -3'
miRNA:   3'- -CUgUGUCCGU--UGGGa--CUGUUu-CCGGG- -5'
33631 5' -54.4 NC_007605.1 + 15445 0.74 0.591983
Target:  5'- aGAgACAGGCAggGCCCcccGGCAGcuGGCCCc -3'
miRNA:   3'- -CUgUGUCCGU--UGGGa--CUGUUu-CCGGG- -5'
33631 5' -54.4 NC_007605.1 + 170483 1.11 0.003241
Target:  5'- uGACACAGGCAACCCUGACAAAGGCCCc -3'
miRNA:   3'- -CUGUGUCCGUUGGGACUGUUUCCGGG- -5'
33631 5' -54.4 NC_007605.1 + 171005 1.11 0.003241
Target:  5'- uGACACAGGCAACCCUGACAAAGGCCCc -3'
miRNA:   3'- -CUGUGUCCGUUGGGACUGUUUCCGGG- -5'
33631 5' -54.4 NC_007605.1 + 171543 1.11 0.003241
Target:  5'- uGACACAGGCAACCCUGACAAAGGCCCc -3'
miRNA:   3'- -CUGUGUCCGUUGGGACUGUUUCCGGG- -5'
33631 5' -54.4 NC_007605.1 + 52173 0.76 0.491767
Target:  5'- cGCGCAGGUAGUCCUGaaauGCGAccGGGCCCu -3'
miRNA:   3'- cUGUGUCCGUUGGGAC----UGUU--UCCGGG- -5'
33631 5' -54.4 NC_007605.1 + 48987 0.75 0.515211
Target:  5'- uGACGguCAGGCAGCuCCUguauuuaacuuugcgGACAGAGGCCa -3'
miRNA:   3'- -CUGU--GUCCGUUG-GGA---------------CUGUUUCCGGg -5'
33631 5' -54.4 NC_007605.1 + 72687 0.75 0.541102
Target:  5'- cGGCGCAGGCAGgCCguu---AGGCCCa -3'
miRNA:   3'- -CUGUGUCCGUUgGGacuguuUCCGGG- -5'
33631 5' -54.4 NC_007605.1 + 107861 0.74 0.571493
Target:  5'- ---cCAGGuCAACCaggaGACAGAGGCCCg -3'
miRNA:   3'- cuguGUCC-GUUGGga--CUGUUUCCGGG- -5'
33631 5' -54.4 NC_007605.1 + 12376 0.74 0.591983
Target:  5'- aGAgACAGGCAggGCCCcccGGCAGcuGGCCCc -3'
miRNA:   3'- -CUgUGUCCGU--UGGGa--CUGUUu-CCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.