Results 1 - 20 of 304 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33632 | 5' | -70.5 | NC_007605.1 | + | 12151 | 0.66 | 0.353735 |
Target: 5'- gCC-CGGCCCgUCCGGCgCCCUCucggaCGCGCu -3' miRNA: 3'- gGGcGCCGGG-GGGUCG-GGGGG-----GCGUG- -5' |
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33632 | 5' | -70.5 | NC_007605.1 | + | 118536 | 0.66 | 0.353735 |
Target: 5'- cCCUGCGaCCCCCUuaacccGGCCUacguCUCCGCAg -3' miRNA: 3'- -GGGCGCcGGGGGG------UCGGG----GGGGCGUg -5' |
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33632 | 5' | -70.5 | NC_007605.1 | + | 123867 | 0.66 | 0.353735 |
Target: 5'- gCCCaGCggacaaGGCCCCCgGGCCUCUCCa--- -3' miRNA: 3'- -GGG-CG------CCGGGGGgUCGGGGGGGcgug -5' |
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33632 | 5' | -70.5 | NC_007605.1 | + | 87771 | 0.66 | 0.353029 |
Target: 5'- gCCGCggGGCCUCCUgccgcggGGCCUCCugCCGCGg -3' miRNA: 3'- gGGCG--CCGGGGGG-------UCGGGGG--GGCGUg -5' |
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33632 | 5' | -70.5 | NC_007605.1 | + | 23757 | 0.66 | 0.351618 |
Target: 5'- aCCGaagugaaGGCCCuggaccaacccggcCCgGGCCCCCCgGUAUc -3' miRNA: 3'- gGGCg------CCGGG--------------GGgUCGGGGGGgCGUG- -5' |
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33632 | 5' | -70.5 | NC_007605.1 | + | 17619 | 0.66 | 0.351618 |
Target: 5'- aCCGaagugaaGGCCCuggaccaacccggcCCgGGCCCCCCgGUAUc -3' miRNA: 3'- gGGCg------CCGGG--------------GGgUCGGGGGGgCGUG- -5' |
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33632 | 5' | -70.5 | NC_007605.1 | + | 20688 | 0.66 | 0.351618 |
Target: 5'- aCCGaagugaaGGCCCuggaccaacccggcCCgGGCCCCCCgGUAUc -3' miRNA: 3'- gGGCg------CCGGG--------------GGgUCGGGGGGgCGUG- -5' |
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33632 | 5' | -70.5 | NC_007605.1 | + | 14550 | 0.66 | 0.351618 |
Target: 5'- aCCGaagugaaGGCCCuggaccaacccggcCCgGGCCCCCCgGUAUc -3' miRNA: 3'- gGGCg------CCGGG--------------GGgUCGGGGGGgCGUG- -5' |
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33632 | 5' | -70.5 | NC_007605.1 | + | 32963 | 0.66 | 0.351618 |
Target: 5'- aCCGaagugaaGGCCCuggaccaacccggcCCgGGCCCCCCgGUAUc -3' miRNA: 3'- gGGCg------CCGGG--------------GGgUCGGGGGGgCGUG- -5' |
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33632 | 5' | -70.5 | NC_007605.1 | + | 26826 | 0.66 | 0.351618 |
Target: 5'- aCCGaagugaaGGCCCuggaccaacccggcCCgGGCCCCCCgGUAUc -3' miRNA: 3'- gGGCg------CCGGG--------------GGgUCGGGGGGgCGUG- -5' |
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33632 | 5' | -70.5 | NC_007605.1 | + | 48850 | 0.66 | 0.346714 |
Target: 5'- gCUgGCGGCCCCgaauccgggCAGUgCUgCCGCACa -3' miRNA: 3'- -GGgCGCCGGGGg--------GUCGgGGgGGCGUG- -5' |
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33632 | 5' | -70.5 | NC_007605.1 | + | 118669 | 0.66 | 0.346714 |
Target: 5'- cCCCaGcCGGaCgCCCCCaAGCUauugguCCCCCGCAg -3' miRNA: 3'- -GGG-C-GCC-G-GGGGG-UCGG------GGGGGCGUg -5' |
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33632 | 5' | -70.5 | NC_007605.1 | + | 70759 | 0.66 | 0.346714 |
Target: 5'- aCCGCuucgucGUCCCCagggCGGCCauaauggaCCCCGCGCa -3' miRNA: 3'- gGGCGc-----CGGGGG----GUCGGg-------GGGGCGUG- -5' |
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33632 | 5' | -70.5 | NC_007605.1 | + | 34838 | 0.66 | 0.34255 |
Target: 5'- cCuuGCGGUagaggguggcguccuCCCCCGGgaauagCCCCCCGCc- -3' miRNA: 3'- -GggCGCCG---------------GGGGGUCg-----GGGGGGCGug -5' |
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33632 | 5' | -70.5 | NC_007605.1 | + | 114104 | 0.66 | 0.339793 |
Target: 5'- cCCCGCaaucaGCCgCCCCGGCUCCUUCucCACu -3' miRNA: 3'- -GGGCGc----CGG-GGGGUCGGGGGGGc-GUG- -5' |
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33632 | 5' | -70.5 | NC_007605.1 | + | 11904 | 0.66 | 0.339793 |
Target: 5'- gCCGUGGCUCCCggggccacggagCGGCUCUUCUGCGg -3' miRNA: 3'- gGGCGCCGGGGG------------GUCGGGGGGGCGUg -5' |
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33632 | 5' | -70.5 | NC_007605.1 | + | 66262 | 0.66 | 0.339793 |
Target: 5'- gCCCGCuGCCaCCUCucugccaggGGCgCCCCCGUg- -3' miRNA: 3'- -GGGCGcCGG-GGGG---------UCGgGGGGGCGug -5' |
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33632 | 5' | -70.5 | NC_007605.1 | + | 31911 | 0.66 | 0.339793 |
Target: 5'- cCCCcCaGCCUgaggCCCAGUCUCCuuGCACu -3' miRNA: 3'- -GGGcGcCGGG----GGGUCGGGGGggCGUG- -5' |
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33632 | 5' | -70.5 | NC_007605.1 | + | 162800 | 0.66 | 0.337737 |
Target: 5'- aCUgGCGGCCgCCCCcGCCacguagcugcccguCUCCgGCACc -3' miRNA: 3'- -GGgCGCCGG-GGGGuCGG--------------GGGGgCGUG- -5' |
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33632 | 5' | -70.5 | NC_007605.1 | + | 75074 | 0.66 | 0.332973 |
Target: 5'- aCCC-CGGCCUCCaCuGCCUCCUCG-ACc -3' miRNA: 3'- -GGGcGCCGGGGG-GuCGGGGGGGCgUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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