miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33633 3' -57.7 NC_007605.1 + 170228 0.74 0.431783
Target:  5'- gGGGcAGggUcGCAGGGGGUgugucugguGGGGGCGg -3'
miRNA:   3'- -CCCaUCuuAcUGUCCCCCG---------CCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 169690 0.74 0.431783
Target:  5'- gGGGcAGggUcGCAGGGGGUgugucugguGGGGGCGg -3'
miRNA:   3'- -CCCaUCuuAcUGUCCCCCG---------CCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 150197 0.74 0.431783
Target:  5'- aGGUgAGAGU--CGGGGGGCGGGcGACGg -3'
miRNA:   3'- cCCA-UCUUAcuGUCCCCCGCCC-CUGU- -5'
33633 3' -57.7 NC_007605.1 + 158592 0.74 0.458427
Target:  5'- cGGUAGGcugcaccgugGUGGCGGGGGGUGcGGGCu -3'
miRNA:   3'- cCCAUCU----------UACUGUCCCCCGCcCCUGu -5'
33633 3' -57.7 NC_007605.1 + 135177 0.74 0.467502
Target:  5'- uGGUGGGGguGguGGGGGCGGGGGu- -3'
miRNA:   3'- cCCAUCUUacUguCCCCCGCCCCUgu -5'
33633 3' -57.7 NC_007605.1 + 135213 0.74 0.467502
Target:  5'- uGGUGGAGgugGugGGGGuGGUGGGGGu- -3'
miRNA:   3'- cCCAUCUUa--CugUCCC-CCGCCCCUgu -5'
33633 3' -57.7 NC_007605.1 + 120288 0.73 0.485923
Target:  5'- aGGGgAGAcgGAcCAGGGGGaaaaGGGGAgCAc -3'
miRNA:   3'- -CCCaUCUuaCU-GUCCCCCg---CCCCU-GU- -5'
33633 3' -57.7 NC_007605.1 + 109494 0.72 0.523747
Target:  5'- uGGUGGAGcacAguGGGGGCGGGGcCGg -3'
miRNA:   3'- cCCAUCUUac-UguCCCCCGCCCCuGU- -5'
33633 3' -57.7 NC_007605.1 + 70904 0.72 0.533382
Target:  5'- cGGGgaaccgGGGGaGAU-GGGGGCGGGGugAc -3'
miRNA:   3'- -CCCa-----UCUUaCUGuCCCCCGCCCCugU- -5'
33633 3' -57.7 NC_007605.1 + 10612 0.72 0.533382
Target:  5'- aGGGgacaAGuGUGGCAGGuGGGCGggaaGGGGCAc -3'
miRNA:   3'- -CCCa---UCuUACUGUCC-CCCGC----CCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 57868 0.72 0.543081
Target:  5'- uGGUGGAG-GACagAGGGGGCGGcGGcCGg -3'
miRNA:   3'- cCCAUCUUaCUG--UCCCCCGCC-CCuGU- -5'
33633 3' -57.7 NC_007605.1 + 128065 0.72 0.559696
Target:  5'- cGGGUGGAA--GCAuGGGGGaaaccugcgaaacuUGGGGGCAg -3'
miRNA:   3'- -CCCAUCUUacUGU-CCCCC--------------GCCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 108041 0.72 0.572497
Target:  5'- aGGGgcGAA-GGguGGGGGUGGGuGCAa -3'
miRNA:   3'- -CCCauCUUaCUguCCCCCGCCCcUGU- -5'
33633 3' -57.7 NC_007605.1 + 34381 0.71 0.591325
Target:  5'- aGGUGGGcUGACAcagacuuggccuuGGGGGUGGuGGGCu -3'
miRNA:   3'- cCCAUCUuACUGU-------------CCCCCGCC-CCUGu -5'
33633 3' -57.7 NC_007605.1 + 64703 0.71 0.592319
Target:  5'- gGGGUGGG-UG-UAGGGGuGaCGGGGGCu -3'
miRNA:   3'- -CCCAUCUuACuGUCCCC-C-GCCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 37211 0.71 0.622243
Target:  5'- aGGG-GGAggGGCA-GGGGCaGGGGCAg -3'
miRNA:   3'- -CCCaUCUuaCUGUcCCCCGcCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 170622 0.71 0.632241
Target:  5'- cGGgcGGGcGGCGGGGGGuCGGGGuccGCGg -3'
miRNA:   3'- cCCauCUUaCUGUCCCCC-GCCCC---UGU- -5'
33633 3' -57.7 NC_007605.1 + 170099 0.71 0.632241
Target:  5'- cGGgcGGGcGGCGGGGGGuCGGGGuccGCGg -3'
miRNA:   3'- cCCauCUUaCUGUCCCCC-GCCCC---UGU- -5'
33633 3' -57.7 NC_007605.1 + 169562 0.71 0.632241
Target:  5'- cGGgcGGGcGGCGGGGGGuCGGGGuccGCGg -3'
miRNA:   3'- cCCauCUUaCUGUCCCCC-GCCCC---UGU- -5'
33633 3' -57.7 NC_007605.1 + 171159 0.71 0.632241
Target:  5'- cGGgcGGGcGGCGGGGGGuCGGGGuccGCGg -3'
miRNA:   3'- cCCauCUUaCUGUCCCCC-GCCCC---UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.