Results 1 - 20 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33633 | 3' | -57.7 | NC_007605.1 | + | 8816 | 0.67 | 0.821436 |
Target: 5'- cGG-AGAcgGGCAGcuacGuGGCGGGGGCGg -3' miRNA: 3'- cCCaUCUuaCUGUCc---C-CCGCCCCUGU- -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 10612 | 0.72 | 0.533382 |
Target: 5'- aGGGgacaAGuGUGGCAGGuGGGCGggaaGGGGCAc -3' miRNA: 3'- -CCCa---UCuUACUGUCC-CCCGC----CCCUGU- -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 10713 | 0.69 | 0.701795 |
Target: 5'- uGGagGGAGUGugGGGuGGGCccGGGGCAg -3' miRNA: 3'- cCCa-UCUUACugUCC-CCCGc-CCCUGU- -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 10812 | 0.79 | 0.226619 |
Target: 5'- uGGGUGGAGgagGGCAGGGcucCGGGGGCAg -3' miRNA: 3'- -CCCAUCUUa--CUGUCCCcc-GCCCCUGU- -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 11768 | 0.66 | 0.882497 |
Target: 5'- cGGUGcaacggGGCAGGGGGaGGGuGGCGg -3' miRNA: 3'- cCCAUcuua--CUGUCCCCCgCCC-CUGU- -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 18363 | 0.67 | 0.829715 |
Target: 5'- aGGGgGGAGUGA-AGGGGGCGaGaaaGACGg -3' miRNA: 3'- -CCCaUCUUACUgUCCCCCGC-Cc--CUGU- -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 18711 | 0.67 | 0.84575 |
Target: 5'- cGGGaUAGcagGACGGGGGGCuGGcGAa- -3' miRNA: 3'- -CCC-AUCuuaCUGUCCCCCGcCC-CUgu -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 34381 | 0.71 | 0.591325 |
Target: 5'- aGGUGGGcUGACAcagacuuggccuuGGGGGUGGuGGGCu -3' miRNA: 3'- cCCAUCUuACUGU-------------CCCCCGCC-CCUGu -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 37211 | 0.71 | 0.622243 |
Target: 5'- aGGG-GGAggGGCA-GGGGCaGGGGCAg -3' miRNA: 3'- -CCCaUCUuaCUGUcCCCCGcCCCUGU- -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 38292 | 0.66 | 0.853494 |
Target: 5'- uGGGcugGGGAUG--GGGaGGGCGGGGcuggcGCAg -3' miRNA: 3'- -CCCa--UCUUACugUCC-CCCGCCCC-----UGU- -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 40146 | 0.75 | 0.389467 |
Target: 5'- cGGUgcaccuGGAA-GGCAGGGGG-GGGGGCAg -3' miRNA: 3'- cCCA------UCUUaCUGUCCCCCgCCCCUGU- -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 43740 | 0.67 | 0.828073 |
Target: 5'- gGGGUGGcaucgaaGGUGGCuuGGGGcuccggaGGUGGGGGCu -3' miRNA: 3'- -CCCAUC-------UUACUG--UCCC-------CCGCCCCUGu -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 47555 | 0.67 | 0.84575 |
Target: 5'- aGGUGGAccUGACGuugcaggcccuuGGGGaGCGGGGGu- -3' miRNA: 3'- cCCAUCUu-ACUGU------------CCCC-CGCCCCUgu -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 48424 | 0.69 | 0.721287 |
Target: 5'- gGGGgagaaAGAcgGGCGGGGGcGUaGGGGAgGa -3' miRNA: 3'- -CCCa----UCUuaCUGUCCCC-CG-CCCCUgU- -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 49893 | 0.66 | 0.861045 |
Target: 5'- cGGUGG-AUGAgaggAGGGGGauccggaGGGGACc -3' miRNA: 3'- cCCAUCuUACUg---UCCCCCg------CCCCUGu -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 51179 | 0.66 | 0.853494 |
Target: 5'- uGGG-AGAGUGAU-GGGGGCGGccaaucccGGGg- -3' miRNA: 3'- -CCCaUCUUACUGuCCCCCGCC--------CCUgu -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 52086 | 0.66 | 0.853494 |
Target: 5'- -cGUAGGAaGACGGGGuuucGCGGGGGa- -3' miRNA: 3'- ccCAUCUUaCUGUCCCc---CGCCCCUgu -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 53860 | 0.69 | 0.730927 |
Target: 5'- aGGGgAGccugGACAGGGgcuuugGGCGGGGAgGa -3' miRNA: 3'- -CCCaUCuua-CUGUCCC------CCGCCCCUgU- -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 55028 | 0.7 | 0.646237 |
Target: 5'- gGGGUGGAAUgucagaccaagGccgauugagccucccGCGGGGGGagGGGGGCAc -3' miRNA: 3'- -CCCAUCUUA-----------C---------------UGUCCCCCg-CCCCUGU- -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 57031 | 0.7 | 0.672157 |
Target: 5'- cGGUguccAGuGUGAUGGGGGacGUGGGGGCAc -3' miRNA: 3'- cCCA----UCuUACUGUCCCC--CGCCCCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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