miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33633 3' -57.7 NC_007605.1 + 170622 0.71 0.632241
Target:  5'- cGGgcGGGcGGCGGGGGGuCGGGGuccGCGg -3'
miRNA:   3'- cCCauCUUaCUGUCCCCC-GCCCC---UGU- -5'
33633 3' -57.7 NC_007605.1 + 158592 0.74 0.458427
Target:  5'- cGGUAGGcugcaccgugGUGGCGGGGGGUGcGGGCu -3'
miRNA:   3'- cCCAUCU----------UACUGUCCCCCGCcCCUGu -5'
33633 3' -57.7 NC_007605.1 + 10612 0.72 0.533382
Target:  5'- aGGGgacaAGuGUGGCAGGuGGGCGggaaGGGGCAc -3'
miRNA:   3'- -CCCa---UCuUACUGUCC-CCCGC----CCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 57868 0.72 0.543081
Target:  5'- uGGUGGAG-GACagAGGGGGCGGcGGcCGg -3'
miRNA:   3'- cCCAUCUUaCUG--UCCCCCGCC-CCuGU- -5'
33633 3' -57.7 NC_007605.1 + 108041 0.72 0.572497
Target:  5'- aGGGgcGAA-GGguGGGGGUGGGuGCAa -3'
miRNA:   3'- -CCCauCUUaCUguCCCCCGCCCcUGU- -5'
33633 3' -57.7 NC_007605.1 + 64703 0.71 0.592319
Target:  5'- gGGGUGGG-UG-UAGGGGuGaCGGGGGCu -3'
miRNA:   3'- -CCCAUCUuACuGUCCCC-C-GCCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 37211 0.71 0.622243
Target:  5'- aGGG-GGAggGGCA-GGGGCaGGGGCAg -3'
miRNA:   3'- -CCCaUCUuaCUGUcCCCCGcCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 169562 0.71 0.632241
Target:  5'- cGGgcGGGcGGCGGGGGGuCGGGGuccGCGg -3'
miRNA:   3'- cCCauCUUaCUGUCCCCC-GCCCC---UGU- -5'
33633 3' -57.7 NC_007605.1 + 170099 0.71 0.632241
Target:  5'- cGGgcGGGcGGCGGGGGGuCGGGGuccGCGg -3'
miRNA:   3'- cCCauCUUaCUGUCCCCC-GCCCC---UGU- -5'
33633 3' -57.7 NC_007605.1 + 171288 0.74 0.431783
Target:  5'- gGGGcAGggUcGCAGGGGGUgugucugguGGGGGCGg -3'
miRNA:   3'- -CCCaUCuuAcUGUCCCCCG---------CCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 170750 0.74 0.431783
Target:  5'- gGGGcAGggUcGCAGGGGGUgugucugguGGGGGCGg -3'
miRNA:   3'- -CCCaUCuuAcUGUCCCCCG---------CCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 170228 0.74 0.431783
Target:  5'- gGGGcAGggUcGCAGGGGGUgugucugguGGGGGCGg -3'
miRNA:   3'- -CCCaUCuuAcUGUCCCCCG---------CCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 170301 1.11 0.001874
Target:  5'- aGGGUAGAAUGACAGGGGGCGGGGACAg -3'
miRNA:   3'- -CCCAUCUUACUGUCCCCCGCCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 170823 1.11 0.001874
Target:  5'- aGGGUAGAAUGACAGGGGGCGGGGACAg -3'
miRNA:   3'- -CCCAUCUUACUGUCCCCCGCCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 171361 1.11 0.001874
Target:  5'- aGGGUAGAAUGACAGGGGGCGGGGACAg -3'
miRNA:   3'- -CCCAUCUUACUGUCCCCCGCCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 57737 0.77 0.292871
Target:  5'- gGGGUGGggUGuCGGGGaGGCGGGuGGu- -3'
miRNA:   3'- -CCCAUCuuACuGUCCC-CCGCCC-CUgu -5'
33633 3' -57.7 NC_007605.1 + 95460 0.75 0.372521
Target:  5'- aGGGgauGAggGugGGGGGGCuguuggaGGGGGCAg -3'
miRNA:   3'- -CCCau-CUuaCugUCCCCCG-------CCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 40146 0.75 0.389467
Target:  5'- cGGUgcaccuGGAA-GGCAGGGGG-GGGGGCAg -3'
miRNA:   3'- cCCA------UCUUaCUGUCCCCCgCCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 150197 0.74 0.431783
Target:  5'- aGGUgAGAGU--CGGGGGGCGGGcGACGg -3'
miRNA:   3'- cCCA-UCUUAcuGUCCCCCGCCC-CUGU- -5'
33633 3' -57.7 NC_007605.1 + 169690 0.74 0.431783
Target:  5'- gGGGcAGggUcGCAGGGGGUgugucugguGGGGGCGg -3'
miRNA:   3'- -CCCaUCuuAcUGUCCCCCG---------CCCCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.