Results 41 - 60 of 140 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33634 | 3' | -54.9 | NC_007605.1 | + | 138730 | 0.67 | 0.941729 |
Target: 5'- aGGUGGCCCcgGGCgcaGGGCaaGACgAGGGa -3' miRNA: 3'- -CCACUGGG--UCGg--UUCGcaCUGgUUCC- -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 18408 | 0.67 | 0.940347 |
Target: 5'- --cGGCCUAcGCCGAGCGgcacggcguucccgUGGCCGuGGa -3' miRNA: 3'- ccaCUGGGU-CGGUUCGC--------------ACUGGUuCC- -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 150920 | 0.67 | 0.93704 |
Target: 5'- gGGUGGgaCgGGgCAGGCGUGAUCcuGGg -3' miRNA: 3'- -CCACUg-GgUCgGUUCGCACUGGuuCC- -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 92562 | 0.67 | 0.93704 |
Target: 5'- -aUGGCCCAaaaauugcagauGUUGAGCGUGGCCAu-- -3' miRNA: 3'- ccACUGGGU------------CGGUUCGCACUGGUucc -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 91319 | 0.67 | 0.93704 |
Target: 5'- cGGgGGCCgGGUCAAGUGgcugggGcACCGGGGc -3' miRNA: 3'- -CCaCUGGgUCGGUUCGCa-----C-UGGUUCC- -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 49706 | 0.67 | 0.93704 |
Target: 5'- --aGAUCCAcCCAGGgGUGGCCAugaccguggucAGGa -3' miRNA: 3'- ccaCUGGGUcGGUUCgCACUGGU-----------UCC- -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 103937 | 0.67 | 0.93704 |
Target: 5'- ---aGCCCGGCCGugccuGCGuUGGCCAcGGc -3' miRNA: 3'- ccacUGGGUCGGUu----CGC-ACUGGUuCC- -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 10937 | 0.67 | 0.93704 |
Target: 5'- aGGUGuacGCCCuggcgguugAGCUGAGCGUGugCAc-- -3' miRNA: 3'- -CCAC---UGGG---------UCGGUUCGCACugGUucc -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 20802 | 0.67 | 0.936558 |
Target: 5'- --aGGCCCgggggcuGGCgAGGCGgcguccgcgGGCCGAGGg -3' miRNA: 3'- ccaCUGGG-------UCGgUUCGCa--------CUGGUUCC- -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 137065 | 0.67 | 0.932117 |
Target: 5'- --aGGCCCccgaAGCCcacuGUGUGGCCGAGu -3' miRNA: 3'- ccaCUGGG----UCGGuu--CGCACUGGUUCc -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 169808 | 0.67 | 0.932117 |
Target: 5'- cGGccGCgCCAGCCAAGCcc--CCAAGGg -3' miRNA: 3'- -CCacUG-GGUCGGUUCGcacuGGUUCC- -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 170346 | 0.67 | 0.932117 |
Target: 5'- cGGccGCgCCAGCCAAGCcc--CCAAGGg -3' miRNA: 3'- -CCacUG-GGUCGGUUCGcacuGGUUCC- -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 171406 | 0.67 | 0.932117 |
Target: 5'- cGGccGCgCCAGCCAAGCcc--CCAAGGg -3' miRNA: 3'- -CCacUG-GGUCGGUUCGcacuGGUUCC- -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 170868 | 0.67 | 0.932117 |
Target: 5'- cGGccGCgCCAGCCAAGCcc--CCAAGGg -3' miRNA: 3'- -CCacUG-GGUCGGUUCGcacuGGUUCC- -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 87163 | 0.67 | 0.921564 |
Target: 5'- -aUGGCuCCAGCCGAGCcuggacacucaGUgGGCCGAcGGg -3' miRNA: 3'- ccACUG-GGUCGGUUCG-----------CA-CUGGUU-CC- -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 62182 | 0.67 | 0.921564 |
Target: 5'- uGUGGCCUuuGGCCugcGGUGUGAggacacggUCAAGGa -3' miRNA: 3'- cCACUGGG--UCGGu--UCGCACU--------GGUUCC- -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 162185 | 0.67 | 0.921564 |
Target: 5'- aGUGACCCuuuAGCCAcucuggggGGCucUGGCCAAGc -3' miRNA: 3'- cCACUGGG---UCGGU--------UCGc-ACUGGUUCc -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 48004 | 0.67 | 0.921564 |
Target: 5'- --gGGCCgUGGCCAGGgGUuACCGAGGc -3' miRNA: 3'- ccaCUGG-GUCGGUUCgCAcUGGUUCC- -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 56323 | 0.67 | 0.915935 |
Target: 5'- -cUGGCCaCGGCCGuucgGGCGgccuccGCCAGGGa -3' miRNA: 3'- ccACUGG-GUCGGU----UCGCac----UGGUUCC- -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 151392 | 0.67 | 0.915935 |
Target: 5'- -cUGGCCaCGGCCAGGgccuCGUaGGCCGAGa -3' miRNA: 3'- ccACUGG-GUCGGUUC----GCA-CUGGUUCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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