Results 1 - 20 of 140 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33634 | 3' | -54.9 | NC_007605.1 | + | 12210 | 0.66 | 0.950412 |
Target: 5'- aGGUGGCCa--CCGAGgGUcuGGCCAAGc -3' miRNA: 3'- -CCACUGGgucGGUUCgCA--CUGGUUCc -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 167434 | 0.66 | 0.954412 |
Target: 5'- uGUGugCCAGUUAAG-GUGauuaGCUAAGGc -3' miRNA: 3'- cCACugGGUCGGUUCgCAC----UGGUUCC- -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 61039 | 0.66 | 0.946186 |
Target: 5'- uGGagagGACCCGGCgaaGGGCG-GGCCAGa- -3' miRNA: 3'- -CCa---CUGGGUCGg--UUCGCaCUGGUUcc -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 59735 | 0.66 | 0.945751 |
Target: 5'- uGGgucugGACCCgGGCCGugcgagcaaaggcGGCGaGAaCCGAGGg -3' miRNA: 3'- -CCa----CUGGG-UCGGU-------------UCGCaCU-GGUUCC- -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 100763 | 0.66 | 0.950412 |
Target: 5'- ---uGCCCGGCagucuuGAGCGUGGCaugGAGGg -3' miRNA: 3'- ccacUGGGUCGg-----UUCGCACUGg--UUCC- -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 79857 | 0.66 | 0.946186 |
Target: 5'- aGUGACaCCgAGCagagCGAGCGggaagaGGCCAGGGc -3' miRNA: 3'- cCACUG-GG-UCG----GUUCGCa-----CUGGUUCC- -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 169315 | 0.66 | 0.946186 |
Target: 5'- gGGUGAggCGGCUAAGag-GGCUAAGGg -3' miRNA: 3'- -CCACUggGUCGGUUCgcaCUGGUUCC- -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 68189 | 0.66 | 0.958186 |
Target: 5'- uGG-GGCCauacgaGGCCuucacuGGCccuGUGGCCAAGGc -3' miRNA: 3'- -CCaCUGGg-----UCGGu-----UCG---CACUGGUUCC- -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 131345 | 0.66 | 0.946186 |
Target: 5'- uGGUGGCUCGGCCGcGGUccucccccGUGAaCGGGGc -3' miRNA: 3'- -CCACUGGGUCGGU-UCG--------CACUgGUUCC- -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 158840 | 0.66 | 0.954412 |
Target: 5'- gGGcUGACCgCGuccGCCcGGCGcagGAUCAAGGa -3' miRNA: 3'- -CC-ACUGG-GU---CGGuUCGCa--CUGGUUCC- -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 138977 | 0.66 | 0.955948 |
Target: 5'- aGGUGGCCUAGCaacGCGaacccccuugggcccUGACCuuuGGu -3' miRNA: 3'- -CCACUGGGUCGguuCGC---------------ACUGGuu-CC- -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 140618 | 0.66 | 0.960698 |
Target: 5'- --gGACCCAGCCcugGAGCucgggggcggccggGUGGCCcaccGGGu -3' miRNA: 3'- ccaCUGGGUCGG---UUCG--------------CACUGGu---UCC- -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 147079 | 0.66 | 0.954412 |
Target: 5'- uGUGACCCuGCaAAGCuacGUGgggaugagcaGCCAGGGa -3' miRNA: 3'- cCACUGGGuCGgUUCG---CAC----------UGGUUCC- -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 25200 | 0.66 | 0.949169 |
Target: 5'- uGGcGGCCagaugucagcagcauGCCAgGGCGUGGCaCAGGGg -3' miRNA: 3'- -CCaCUGGgu-------------CGGU-UCGCACUG-GUUCC- -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 165976 | 0.66 | 0.950412 |
Target: 5'- gGGcGACCguGCCuga-GUGACCAuAGGu -3' miRNA: 3'- -CCaCUGGguCGGuucgCACUGGU-UCC- -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 91167 | 0.66 | 0.946186 |
Target: 5'- uGGUaACCCauaGGCCAuccGGCG--GCCAGGGu -3' miRNA: 3'- -CCAcUGGG---UCGGU---UCGCacUGGUUCC- -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 45458 | 0.66 | 0.950412 |
Target: 5'- -uUGGCCgGGCCGGGCcc--CCGGGGg -3' miRNA: 3'- ccACUGGgUCGGUUCGcacuGGUUCC- -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 69755 | 0.66 | 0.963103 |
Target: 5'- --gGACCgaGGCC-GGCGUGgggugaacaggaaugGCCGAGGa -3' miRNA: 3'- ccaCUGGg-UCGGuUCGCAC---------------UGGUUCC- -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 142046 | 0.66 | 0.955948 |
Target: 5'- aGGUGGCCUAGCaacGCGaacccccuugggcccUGACCuuuGGu -3' miRNA: 3'- -CCACUGGGUCGguuCGC---------------ACUGGuu-CC- -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 65528 | 0.66 | 0.957819 |
Target: 5'- gGGUGcaggGCCUGGCCGAugucuuuGCG-GACCuGGGc -3' miRNA: 3'- -CCAC----UGGGUCGGUU-------CGCaCUGGuUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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