miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33634 3' -54.9 NC_007605.1 + 169908 1.13 0.002355
Target:  5'- gGGUGACCCAGCCAAGCGUGACCAAGGg -3'
miRNA:   3'- -CCACUGGGUCGGUUCGCACUGGUUCC- -5'
33634 3' -54.9 NC_007605.1 + 170446 1.13 0.002355
Target:  5'- gGGUGACCCAGCCAAGCGUGACCAAGGg -3'
miRNA:   3'- -CCACUGGGUCGGUUCGCACUGGUUCC- -5'
33634 3' -54.9 NC_007605.1 + 170968 1.13 0.002355
Target:  5'- gGGUGACCCAGCCAAGCGUGACCAAGGg -3'
miRNA:   3'- -CCACUGGGUCGGUUCGCACUGGUUCC- -5'
33634 3' -54.9 NC_007605.1 + 171506 1.13 0.002355
Target:  5'- gGGUGACCCAGCCAAGCGUGACCAAGGg -3'
miRNA:   3'- -CCACUGGGUCGGUUCGCACUGGUUCC- -5'
33634 3' -54.9 NC_007605.1 + 156381 0.85 0.164576
Target:  5'- aGGUGGCCUGGCCcgggguGCGUGGCCAAGa -3'
miRNA:   3'- -CCACUGGGUCGGuu----CGCACUGGUUCc -5'
33634 3' -54.9 NC_007605.1 + 153312 0.85 0.164576
Target:  5'- aGGUGGCCUGGCCcgggguGCGUGGCCAAGa -3'
miRNA:   3'- -CCACUGGGUCGGuu----CGCACUGGUUCc -5'
33634 3' -54.9 NC_007605.1 + 150243 0.85 0.164576
Target:  5'- aGGUGGCCUGGCCcgggguGCGUGGCCAAGa -3'
miRNA:   3'- -CCACUGGGUCGGuu----CGCACUGGUUCc -5'
33634 3' -54.9 NC_007605.1 + 147174 0.85 0.164576
Target:  5'- aGGUGGCCUGGCCcgggguGCGUGGCCAAGa -3'
miRNA:   3'- -CCACUGGGUCGGuu----CGCACUGGUUCc -5'
33634 3' -54.9 NC_007605.1 + 144105 0.85 0.164576
Target:  5'- aGGUGGCCUGGCCcgggguGCGUGGCCAAGa -3'
miRNA:   3'- -CCACUGGGUCGGuu----CGCACUGGUUCc -5'
33634 3' -54.9 NC_007605.1 + 141036 0.85 0.164576
Target:  5'- aGGUGGCCUGGCCcgggguGCGUGGCCAAGa -3'
miRNA:   3'- -CCACUGGGUCGGuu----CGCACUGGUUCc -5'
33634 3' -54.9 NC_007605.1 + 159450 0.85 0.164576
Target:  5'- aGGUGGCCUGGCCcgggguGCGUGGCCAAGa -3'
miRNA:   3'- -CCACUGGGUCGGuu----CGCACUGGUUCc -5'
33634 3' -54.9 NC_007605.1 + 137967 0.85 0.164576
Target:  5'- aGGUGGCCUGGCCcgggguGCGUGGCCAAGa -3'
miRNA:   3'- -CCACUGGGUCGGuu----CGCACUGGUUCc -5'
33634 3' -54.9 NC_007605.1 + 60275 0.81 0.281116
Target:  5'- gGGUGGCCguGUCGGcCGUGGCCAGGGc -3'
miRNA:   3'- -CCACUGGguCGGUUcGCACUGGUUCC- -5'
33634 3' -54.9 NC_007605.1 + 122946 0.78 0.393086
Target:  5'- -cUGACCCGGCCAGGCGc-AUCAGGGc -3'
miRNA:   3'- ccACUGGGUCGGUUCGCacUGGUUCC- -5'
33634 3' -54.9 NC_007605.1 + 8232 0.77 0.445298
Target:  5'- --gGACCaGGCCAAG-GUGGCCAAGGu -3'
miRNA:   3'- ccaCUGGgUCGGUUCgCACUGGUUCC- -5'
33634 3' -54.9 NC_007605.1 + 82171 0.75 0.549962
Target:  5'- aGGUGccGCCCugAGCCAgAGUGUuaGGCCAGGGg -3'
miRNA:   3'- -CCAC--UGGG--UCGGU-UCGCA--CUGGUUCC- -5'
33634 3' -54.9 NC_007605.1 + 169662 0.75 0.569903
Target:  5'- --gGGCgCAGCCAuGCGUGACCGugaugAGGg -3'
miRNA:   3'- ccaCUGgGUCGGUuCGCACUGGU-----UCC- -5'
33634 3' -54.9 NC_007605.1 + 170200 0.75 0.569903
Target:  5'- --gGGCgCAGCCAuGCGUGACCGugaugAGGg -3'
miRNA:   3'- ccaCUGgGUCGGUuCGCACUGGU-----UCC- -5'
33634 3' -54.9 NC_007605.1 + 170722 0.75 0.569903
Target:  5'- --gGGCgCAGCCAuGCGUGACCGugaugAGGg -3'
miRNA:   3'- ccaCUGgGUCGGUuCGCACUGGU-----UCC- -5'
33634 3' -54.9 NC_007605.1 + 171260 0.75 0.569903
Target:  5'- --gGGCgCAGCCAuGCGUGACCGugaugAGGg -3'
miRNA:   3'- ccaCUGgGUCGGUuCGCACUGGU-----UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.