miRNA display CGI


Results 21 - 40 of 284 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33634 5' -54.4 NC_007605.1 + 136525 0.75 0.56131
Target:  5'- gGACACAGGgGggcggggaugGCCCgggugGACAGAGGgCCu -3'
miRNA:   3'- -CUGUGUCCgU----------UGGGa----CUGUUUCCgGG- -5'
33634 5' -54.4 NC_007605.1 + 145731 0.75 0.56131
Target:  5'- gGACACAGGgGggcggggaugGCCCgggugGACAGAGGgCCu -3'
miRNA:   3'- -CUGUGUCCgU----------UGGGa----CUGUUUCCgGG- -5'
33634 5' -54.4 NC_007605.1 + 107861 0.74 0.571493
Target:  5'- ---cCAGGuCAACCaggaGACAGAGGCCCg -3'
miRNA:   3'- cuguGUCC-GUUGGga--CUGUUUCCGGG- -5'
33634 5' -54.4 NC_007605.1 + 12799 0.74 0.581719
Target:  5'- gGACGCGGuCAGCCCcGGCc-AGGCCCu -3'
miRNA:   3'- -CUGUGUCcGUUGGGaCUGuuUCCGGG- -5'
33634 5' -54.4 NC_007605.1 + 24652 0.74 0.591983
Target:  5'- aGAgACAGGCAggGCCCcccGGCAGcuGGCCCc -3'
miRNA:   3'- -CUgUGUCCGU--UGGGa--CUGUUu-CCGGG- -5'
33634 5' -54.4 NC_007605.1 + 27721 0.74 0.591983
Target:  5'- aGAgACAGGCAggGCCCcccGGCAGcuGGCCCc -3'
miRNA:   3'- -CUgUGUCCGU--UGGGa--CUGUUu-CCGGG- -5'
33634 5' -54.4 NC_007605.1 + 30790 0.74 0.591983
Target:  5'- aGAgACAGGCAggGCCCcccGGCAGcuGGCCCc -3'
miRNA:   3'- -CUgUGUCCGU--UGGGa--CUGUUu-CCGGG- -5'
33634 5' -54.4 NC_007605.1 + 12376 0.74 0.591983
Target:  5'- aGAgACAGGCAggGCCCcccGGCAGcuGGCCCc -3'
miRNA:   3'- -CUgUGUCCGU--UGGGa--CUGUUu-CCGGG- -5'
33634 5' -54.4 NC_007605.1 + 15445 0.74 0.591983
Target:  5'- aGAgACAGGCAggGCCCcccGGCAGcuGGCCCc -3'
miRNA:   3'- -CUgUGUCCGU--UGGGa--CUGUUu-CCGGG- -5'
33634 5' -54.4 NC_007605.1 + 21583 0.74 0.591983
Target:  5'- aGAgACAGGCAggGCCCcccGGCAGcuGGCCCc -3'
miRNA:   3'- -CUgUGUCCGU--UGGGa--CUGUUu-CCGGG- -5'
33634 5' -54.4 NC_007605.1 + 18514 0.74 0.591983
Target:  5'- aGAgACAGGCAggGCCCcccGGCAGcuGGCCCc -3'
miRNA:   3'- -CUgUGUCCGU--UGGGa--CUGUUu-CCGGG- -5'
33634 5' -54.4 NC_007605.1 + 33859 0.74 0.591983
Target:  5'- aGAgACAGGCAggGCCCcccGGCAGcuGGCCCc -3'
miRNA:   3'- -CUgUGUCCGU--UGGGa--CUGUUu-CCGGG- -5'
33634 5' -54.4 NC_007605.1 + 159261 0.74 0.591983
Target:  5'- cGGCGCgccuguccucccAGG-GACCCgaGACGAAGGCCCg -3'
miRNA:   3'- -CUGUG------------UCCgUUGGGa-CUGUUUCCGGG- -5'
33634 5' -54.4 NC_007605.1 + 72298 0.73 0.622922
Target:  5'- aGAUGCAGGagcuGACCCaGGCGAcgagauccAGGCCCa -3'
miRNA:   3'- -CUGUGUCCg---UUGGGaCUGUU--------UCCGGG- -5'
33634 5' -54.4 NC_007605.1 + 110369 0.73 0.622922
Target:  5'- uGugGCAGGCcccGGCCCcGGCuccGGCCCu -3'
miRNA:   3'- -CugUGUCCG---UUGGGaCUGuuuCCGGG- -5'
33634 5' -54.4 NC_007605.1 + 119666 0.73 0.643597
Target:  5'- -uUugAGGCGGCCgUGGCGgcGGCCUu -3'
miRNA:   3'- cuGugUCCGUUGGgACUGUuuCCGGG- -5'
33634 5' -54.4 NC_007605.1 + 66358 0.73 0.643597
Target:  5'- cGGCGCAGGUugcggGGCCggUUGACAucaugagcaAGGGCCCa -3'
miRNA:   3'- -CUGUGUCCG-----UUGG--GACUGU---------UUCCGGG- -5'
33634 5' -54.4 NC_007605.1 + 168934 0.73 0.653925
Target:  5'- uGGCGcCGGGCcgccGCCCUGGCAucugcuccGGGGCCg -3'
miRNA:   3'- -CUGU-GUCCGu---UGGGACUGU--------UUCCGGg -5'
33634 5' -54.4 NC_007605.1 + 36438 0.73 0.653925
Target:  5'- ----uGGGCuuCCC-GGCAGAGGCCCu -3'
miRNA:   3'- cugugUCCGuuGGGaCUGUUUCCGGG- -5'
33634 5' -54.4 NC_007605.1 + 162028 0.73 0.664235
Target:  5'- cGCACAGGCAGCCgCcGGCcguacacccGGCCCu -3'
miRNA:   3'- cUGUGUCCGUUGG-GaCUGuuu------CCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.