miRNA display CGI


Results 1 - 20 of 284 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33634 5' -54.4 NC_007605.1 + 171543 1.11 0.003241
Target:  5'- uGACACAGGCAACCCUGACAAAGGCCCc -3'
miRNA:   3'- -CUGUGUCCGUUGGGACUGUUUCCGGG- -5'
33634 5' -54.4 NC_007605.1 + 171498 0.66 0.941431
Target:  5'- gGGCuccgGGGUGACCCagccaagcgUGACcaAGGGGCCCg -3'
miRNA:   3'- -CUGug--UCCGUUGGG---------ACUG--UUUCCGGG- -5'
33634 5' -54.4 NC_007605.1 + 171441 0.7 0.819313
Target:  5'- --aGCGGGCAAUggagCgUGACgAAGGGCCCc -3'
miRNA:   3'- cugUGUCCGUUG----GgACUG-UUUCCGGG- -5'
33634 5' -54.4 NC_007605.1 + 171005 1.11 0.003241
Target:  5'- uGACACAGGCAACCCUGACAAAGGCCCc -3'
miRNA:   3'- -CUGUGUCCGUUGGGACUGUUUCCGGG- -5'
33634 5' -54.4 NC_007605.1 + 170960 0.66 0.941431
Target:  5'- gGGCuccgGGGUGACCCagccaagcgUGACcaAGGGGCCCg -3'
miRNA:   3'- -CUGug--UCCGUUGGG---------ACUG--UUUCCGGG- -5'
33634 5' -54.4 NC_007605.1 + 170903 0.7 0.819313
Target:  5'- --aGCGGGCAAUggagCgUGACgAAGGGCCCc -3'
miRNA:   3'- cugUGUCCGUUG----GgACUG-UUUCCGGG- -5'
33634 5' -54.4 NC_007605.1 + 170483 1.11 0.003241
Target:  5'- uGACACAGGCAACCCUGACAAAGGCCCc -3'
miRNA:   3'- -CUGUGUCCGUUGGGACUGUUUCCGGG- -5'
33634 5' -54.4 NC_007605.1 + 170438 0.66 0.941431
Target:  5'- gGGCuccgGGGUGACCCagccaagcgUGACcaAGGGGCCCg -3'
miRNA:   3'- -CUGug--UCCGUUGGG---------ACUG--UUUCCGGG- -5'
33634 5' -54.4 NC_007605.1 + 170381 0.7 0.819313
Target:  5'- --aGCGGGCAAUggagCgUGACgAAGGGCCCc -3'
miRNA:   3'- cugUGUCCGUUG----GgACUG-UUUCCGGG- -5'
33634 5' -54.4 NC_007605.1 + 169945 1.11 0.003241
Target:  5'- uGACACAGGCAACCCUGACAAAGGCCCc -3'
miRNA:   3'- -CUGUGUCCGUUGGGACUGUUUCCGGG- -5'
33634 5' -54.4 NC_007605.1 + 169900 0.66 0.941431
Target:  5'- gGGCuccgGGGUGACCCagccaagcgUGACcaAGGGGCCCg -3'
miRNA:   3'- -CUGug--UCCGUUGGG---------ACUG--UUUCCGGG- -5'
33634 5' -54.4 NC_007605.1 + 169843 0.7 0.819313
Target:  5'- --aGCGGGCAAUggagCgUGACgAAGGGCCCc -3'
miRNA:   3'- cugUGUCCGUUG----GgACUG-UUUCCGGG- -5'
33634 5' -54.4 NC_007605.1 + 168934 0.73 0.653925
Target:  5'- uGGCGcCGGGCcgccGCCCUGGCAucugcuccGGGGCCg -3'
miRNA:   3'- -CUGU-GUCCGu---UGGGACUGU--------UUCCGGg -5'
33634 5' -54.4 NC_007605.1 + 168893 0.66 0.941431
Target:  5'- uGGCAU-GGCAuucagccgccGCCCUGGucugAAAGGCCUg -3'
miRNA:   3'- -CUGUGuCCGU----------UGGGACUg---UUUCCGGG- -5'
33634 5' -54.4 NC_007605.1 + 168443 0.68 0.889574
Target:  5'- uGCAuucCAGGUcccguGGCCCUGGCc--GGCCCc -3'
miRNA:   3'- cUGU---GUCCG-----UUGGGACUGuuuCCGGG- -5'
33634 5' -54.4 NC_007605.1 + 166934 0.67 0.926327
Target:  5'- -uCGCAGGCAcucguacuGCUcgCUGGCAAAGGaugaCCa -3'
miRNA:   3'- cuGUGUCCGU--------UGG--GACUGUUUCCg---GG- -5'
33634 5' -54.4 NC_007605.1 + 166725 0.71 0.744998
Target:  5'- cGGCACAGGC-AUCC-GGCAuucgugAAGGCCg -3'
miRNA:   3'- -CUGUGUCCGuUGGGaCUGU------UUCCGGg -5'
33634 5' -54.4 NC_007605.1 + 166611 0.66 0.958212
Target:  5'- cACGguGGCAcgGCCUgccagGGCAGAgucccuGGCCCc -3'
miRNA:   3'- cUGUguCCGU--UGGGa----CUGUUU------CCGGG- -5'
33634 5' -54.4 NC_007605.1 + 165963 0.66 0.954369
Target:  5'- gGGCGCGGGUcccccuAGCCCcGGCGGGGaUCCg -3'
miRNA:   3'- -CUGUGUCCG------UUGGGaCUGUUUCcGGG- -5'
33634 5' -54.4 NC_007605.1 + 163199 0.69 0.843747
Target:  5'- cACACGGGCcucugGACCCUcacagucGGCAAacagGGGCCa -3'
miRNA:   3'- cUGUGUCCG-----UUGGGA-------CUGUU----UCCGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.