miRNA display CGI

Results 1 - 11 of 11 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
342	3'	-52.7	AC_000011.1	+	18694	0.66	0.710709
	Target:  5'- -gUAGG-CGgUGCCGGAGUAGggUUUg -3' miRNA:   3'- cgAUCCaGCgGUGGCUUCGUCuuAGA- -5'
342	3'	-52.7	AC_000011.1	+	22012	0.67	0.676482
	Target:  5'- uGCUGGG-CGCCcugcaACUGAcGCGGAAgCUg -3' miRNA:   3'- -CGAUCCaGCGG-----UGGCUuCGUCUUaGA- -5'
342	3'	-52.7	AC_000011.1	+	3100	0.67	0.653409
	Target:  5'- --gGGGUC-CCGCCGAGGCAuguUCa -3' miRNA:   3'- cgaUCCAGcGGUGGCUUCGUcuuAGa -5'
342	3'	-52.7	AC_000011.1	+	12996	0.67	0.653409
	Target:  5'- uGCUGaG-CGCgUACUGggGCGGGAUCUu -3' miRNA:   3'- -CGAUcCaGCG-GUGGCuuCGUCUUAGA- -5'
342	3'	-52.7	AC_000011.1	+	5236	0.68	0.595551
	Target:  5'- gGCUGGG-CGCUugCGAGGguGcgcuUCa -3' miRNA:   3'- -CGAUCCaGCGGugGCUUCguCuu--AGa -5'
342	3'	-52.7	AC_000011.1	+	10990	0.68	0.582891
	Target:  5'- gGCUGGcgcgccugggggcGUCGUCGCCGGAGCGGc---- -3' miRNA:   3'- -CGAUC-------------CAGCGGUGGCUUCGUCuuaga -5'
342	3'	-52.7	AC_000011.1	+	26842	0.69	0.572573
	Target:  5'- cGCUGGGUCuGCgACCuGA-CGGAGUCUu -3' miRNA:   3'- -CGAUCCAG-CGgUGGcUUcGUCUUAGA- -5'
342	3'	-52.7	AC_000011.1	+	3890	0.69	0.54981
	Target:  5'- uGCUGGGUCaGCuCGCCcAGGCGcuGggUCa -3' miRNA:   3'- -CGAUCCAG-CG-GUGGcUUCGU--CuuAGa -5'
342	3'	-52.7	AC_000011.1	+	10952	0.69	0.527334
	Target:  5'- gGCUGGaaGUUGCUGCUGggGCGGGggCa -3' miRNA:   3'- -CGAUC--CAGCGGUGGCuuCGUCUuaGa -5'
342	3'	-52.7	AC_000011.1	+	20078	0.74	0.281385
	Target:  5'- cGC-AGGUCGUUGCCGAGggagcucuGCAGGAUCa -3' miRNA:   3'- -CGaUCCAGCGGUGGCUU--------CGUCUUAGa -5'
342	3'	-52.7	AC_000011.1	+	1746	1.1	0.000915
	Target:  5'- aGCUAGGUCGCCACCGAAGCAGAAUCUc -3' miRNA:   3'- -CGAUCCAGCGGUGGCUUCGUCUUAGA- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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