Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
349 | 3' | -52.8 | AC_000011.1 | + | 7151 | 0.71 | 0.394454 |
Target: 5'- uGGAGaaGGGCUgCUGCGCCuacAAGGCCg -3' miRNA: 3'- gUUUCcaUUCGA-GGCGCGGu--UUCCGG- -5' |
|||||||
349 | 3' | -52.8 | AC_000011.1 | + | 30999 | 0.72 | 0.348412 |
Target: 5'- uCAGAGGagccUGAGCagCCGCGCCAcucgcuGGUCg -3' miRNA: 3'- -GUUUCC----AUUCGa-GGCGCGGUuu----CCGG- -5' |
|||||||
349 | 3' | -52.8 | AC_000011.1 | + | 5425 | 1.13 | 0.000497 |
Target: 5'- cCAAAGGUAAGCUCCGCGCCAAAGGCCa -3' miRNA: 3'- -GUUUCCAUUCGAGGCGCGGUUUCCGG- -5' |
|||||||
349 | 3' | -52.8 | AC_000011.1 | + | 12874 | 0.66 | 0.713414 |
Target: 5'- --uAGGUcuGCUCguccacgUGCGCCu--GGCCg -3' miRNA: 3'- guuUCCAuuCGAG-------GCGCGGuuuCCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home