miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3504 3' -42.7 NC_001623.1 + 25901 1.14 0.02675
Target:  5'- uUGAUGCAAAGCAAACAUGUAAUCGACg -3'
miRNA:   3'- -ACUACGUUUCGUUUGUACAUUAGCUG- -5'
3504 3' -42.7 NC_001623.1 + 6852 0.76 0.98695
Target:  5'- uUGAcaaCAAAGCAuACAUGUAcGUCGACg -3'
miRNA:   3'- -ACUac-GUUUCGUuUGUACAU-UAGCUG- -5'
3504 3' -42.7 NC_001623.1 + 31492 0.74 0.996208
Target:  5'- --uUGCAcAGCAAAUGUGgguuGUCGACa -3'
miRNA:   3'- acuACGUuUCGUUUGUACau--UAGCUG- -5'
3504 3' -42.7 NC_001623.1 + 108489 0.73 0.998527
Target:  5'- uUGGUGCAcGGCAucagcaaaAACGUGUcGUcCGACa -3'
miRNA:   3'- -ACUACGUuUCGU--------UUGUACAuUA-GCUG- -5'
3504 3' -42.7 NC_001623.1 + 35826 0.72 0.999225
Target:  5'- cGGUGCGgcGCuacAACAgacgcGUAAUCGACu -3'
miRNA:   3'- aCUACGUuuCGu--UUGUa----CAUUAGCUG- -5'
3504 3' -42.7 NC_001623.1 + 131398 0.72 0.999383
Target:  5'- cUGcgGCGAGGCAAACAaaucuggcgacUGUGGuauuacguaauUCGGCg -3'
miRNA:   3'- -ACuaCGUUUCGUUUGU-----------ACAUU-----------AGCUG- -5'
3504 3' -42.7 NC_001623.1 + 120816 0.71 0.999702
Target:  5'- uUGAcGCGGGacGC-AGCGUGUAGUCGAUu -3'
miRNA:   3'- -ACUaCGUUU--CGuUUGUACAUUAGCUG- -5'
3504 3' -42.7 NC_001623.1 + 51139 0.71 0.999702
Target:  5'- aGAuauUGCAAAGCAAAC-UGUAcuucuUUGGCg -3'
miRNA:   3'- aCU---ACGUUUCGUUUGuACAUu----AGCUG- -5'
3504 3' -42.7 NC_001623.1 + 41415 0.7 0.999866
Target:  5'- --uUGaAGGGCAAGCuUGUGGUCGGCc -3'
miRNA:   3'- acuACgUUUCGUUUGuACAUUAGCUG- -5'
3504 3' -42.7 NC_001623.1 + 32335 0.7 0.999866
Target:  5'- cGGUGCAcauuacGGCAAACGUGUuGUCa-- -3'
miRNA:   3'- aCUACGUu-----UCGUUUGUACAuUAGcug -5'
3504 3' -42.7 NC_001623.1 + 34977 0.7 0.999899
Target:  5'- aUGAgcaGCAAGuGCAAACGaGUGcUCGACu -3'
miRNA:   3'- -ACUa--CGUUU-CGUUUGUaCAUuAGCUG- -5'
3504 3' -42.7 NC_001623.1 + 59591 0.69 0.99997
Target:  5'- --uUGCAAAGCGgguucaacGACAUGguaUAGUUGGCa -3'
miRNA:   3'- acuACGUUUCGU--------UUGUAC---AUUAGCUG- -5'
3504 3' -42.7 NC_001623.1 + 120532 0.69 0.99997
Target:  5'- aGAUGCAuuuguuGuCGAGCGUGUAucuaaacUCGGCa -3'
miRNA:   3'- aCUACGUuu----C-GUUUGUACAUu------AGCUG- -5'
3504 3' -42.7 NC_001623.1 + 128163 0.69 0.999985
Target:  5'- aUGAaGuCAGAGCAgcuuuaAACGUGUGgugcacAUCGACg -3'
miRNA:   3'- -ACUaC-GUUUCGU------UUGUACAU------UAGCUG- -5'
3504 3' -42.7 NC_001623.1 + 44203 0.68 0.999989
Target:  5'- cGA-GCAuuGCAAACAuauUGUGGaCGGCg -3'
miRNA:   3'- aCUaCGUuuCGUUUGU---ACAUUaGCUG- -5'
3504 3' -42.7 NC_001623.1 + 53977 0.68 0.999989
Target:  5'- cGAUGCAAuauacauuGCGAAUAUacagAAUCGGCc -3'
miRNA:   3'- aCUACGUUu-------CGUUUGUAca--UUAGCUG- -5'
3504 3' -42.7 NC_001623.1 + 68361 0.68 0.999997
Target:  5'- -uAUGCGGGGCAuuuCAUGgucacGUCGGCc -3'
miRNA:   3'- acUACGUUUCGUuu-GUACau---UAGCUG- -5'
3504 3' -42.7 NC_001623.1 + 109413 0.67 0.999998
Target:  5'- -aGUGCGAGGUggGCGaagagcUGAUCGACc -3'
miRNA:   3'- acUACGUUUCGuuUGUac----AUUAGCUG- -5'
3504 3' -42.7 NC_001623.1 + 33217 0.67 0.999998
Target:  5'- ---cGCGcuuuacaaaacGAGguAGCGUGUAAUCGAa -3'
miRNA:   3'- acuaCGU-----------UUCguUUGUACAUUAGCUg -5'
3504 3' -42.7 NC_001623.1 + 40429 0.67 0.999999
Target:  5'- cGAUGCGagcuuuuauucaaccGAGCGuGCAUGUuugcAAUCGuGCa -3'
miRNA:   3'- aCUACGU---------------UUCGUuUGUACA----UUAGC-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.