Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3507 | 5' | -53.1 | NC_001623.1 | + | 88360 | 1.15 | 0.001804 |
Target: 5'- cGCCAGCAAGACCUUCGGCGCAAACGCa -3' miRNA: 3'- -CGGUCGUUCUGGAAGCCGCGUUUGCG- -5' |
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3507 | 5' | -53.1 | NC_001623.1 | + | 78950 | 0.74 | 0.634263 |
Target: 5'- aCCAGCAAGAaacggcaGGCGCAGAUGUu -3' miRNA: 3'- cGGUCGUUCUggaag--CCGCGUUUGCG- -5' |
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3507 | 5' | -53.1 | NC_001623.1 | + | 94831 | 0.73 | 0.655297 |
Target: 5'- aGCCGaauuuuuuuGUAGGGCUcugcuuuaUUCGGCGCAGACGa -3' miRNA: 3'- -CGGU---------CGUUCUGG--------AAGCCGCGUUUGCg -5' |
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3507 | 5' | -53.1 | NC_001623.1 | + | 10524 | 0.73 | 0.66579 |
Target: 5'- cGUCuGCAuugaaccGAUCUUCGGCGgCGAugGCg -3' miRNA: 3'- -CGGuCGUu------CUGGAAGCCGC-GUUugCG- -5' |
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3507 | 5' | -53.1 | NC_001623.1 | + | 65716 | 0.73 | 0.676254 |
Target: 5'- gGCCGGCGAauuGACCgcgUUGGCgGCcGACGUu -3' miRNA: 3'- -CGGUCGUU---CUGGa--AGCCG-CGuUUGCG- -5' |
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3507 | 5' | -53.1 | NC_001623.1 | + | 125727 | 0.73 | 0.686679 |
Target: 5'- -aUAGcCAAGACgUUUGGCGCcuuAAGCGCa -3' miRNA: 3'- cgGUC-GUUCUGgAAGCCGCG---UUUGCG- -5' |
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3507 | 5' | -53.1 | NC_001623.1 | + | 18781 | 0.73 | 0.697057 |
Target: 5'- gGCCuGCGcuAUCUucuaUCGGCGUAAACGUg -3' miRNA: 3'- -CGGuCGUucUGGA----AGCCGCGUUUGCG- -5' |
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3507 | 5' | -53.1 | NC_001623.1 | + | 6037 | 0.71 | 0.757768 |
Target: 5'- cGCaGGCGGGGCUggCGGCGgAGGCGg -3' miRNA: 3'- -CGgUCGUUCUGGaaGCCGCgUUUGCg -5' |
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3507 | 5' | -53.1 | NC_001623.1 | + | 6570 | 0.71 | 0.757768 |
Target: 5'- aGCCAGCGGcGCCUgcgcCGGUGCccacaaucguGCGCg -3' miRNA: 3'- -CGGUCGUUcUGGAa---GCCGCGuu--------UGCG- -5' |
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3507 | 5' | -53.1 | NC_001623.1 | + | 122631 | 0.69 | 0.87212 |
Target: 5'- aUCAGUAucaauuGugCUcCGGCGCAcACGCu -3' miRNA: 3'- cGGUCGUu-----CugGAaGCCGCGUuUGCG- -5' |
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3507 | 5' | -53.1 | NC_001623.1 | + | 75922 | 0.68 | 0.898361 |
Target: 5'- cGCCAGCAccGCCUcgaagcgcUCgGGCGUuggucacgucaaagAAACGCa -3' miRNA: 3'- -CGGUCGUucUGGA--------AG-CCGCG--------------UUUGCG- -5' |
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3507 | 5' | -53.1 | NC_001623.1 | + | 31083 | 0.68 | 0.902955 |
Target: 5'- aGCCGGaCAAGgcuguccugcuguguGCCcgUCGcgcguaccggaGCGCGAACGCg -3' miRNA: 3'- -CGGUC-GUUC---------------UGGa-AGC-----------CGCGUUUGCG- -5' |
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3507 | 5' | -53.1 | NC_001623.1 | + | 2148 | 0.68 | 0.912999 |
Target: 5'- -gCAGaCGGcGCCggucUCGGCGCAAGCGg -3' miRNA: 3'- cgGUC-GUUcUGGa---AGCCGCGUUUGCg -5' |
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3507 | 5' | -53.1 | NC_001623.1 | + | 61499 | 0.68 | 0.918952 |
Target: 5'- gGCUaAGCGuuaaACCUUCGGCGCcgccCGCc -3' miRNA: 3'- -CGG-UCGUuc--UGGAAGCCGCGuuu-GCG- -5' |
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3507 | 5' | -53.1 | NC_001623.1 | + | 106442 | 0.67 | 0.930099 |
Target: 5'- uGCCAGau-GGCCgccgUCGGUGUcuGCGa -3' miRNA: 3'- -CGGUCguuCUGGa---AGCCGCGuuUGCg -5' |
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3507 | 5' | -53.1 | NC_001623.1 | + | 120563 | 0.67 | 0.940237 |
Target: 5'- cUCGGC-AGACUgaacuuggguUUCGGCGCcuucACGCa -3' miRNA: 3'- cGGUCGuUCUGG----------AAGCCGCGuu--UGCG- -5' |
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3507 | 5' | -53.1 | NC_001623.1 | + | 119918 | 0.67 | 0.949374 |
Target: 5'- uGCuUAGCAcGAC--UCGGCGCGugaccguGCGCa -3' miRNA: 3'- -CG-GUCGUuCUGgaAGCCGCGUu------UGCG- -5' |
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3507 | 5' | -53.1 | NC_001623.1 | + | 75485 | 0.67 | 0.949374 |
Target: 5'- cGCCuGCAAcACCa--GGCGCAGgaccugccacuGCGCc -3' miRNA: 3'- -CGGuCGUUcUGGaagCCGCGUU-----------UGCG- -5' |
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3507 | 5' | -53.1 | NC_001623.1 | + | 109954 | 0.66 | 0.953573 |
Target: 5'- uUCGGCcguguGGACCaacgCGGCGCccuCGCa -3' miRNA: 3'- cGGUCGu----UCUGGaa--GCCGCGuuuGCG- -5' |
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3507 | 5' | -53.1 | NC_001623.1 | + | 77487 | 0.66 | 0.957531 |
Target: 5'- -aCAGUAcGAaug-CGGCGUGAACGCg -3' miRNA: 3'- cgGUCGUuCUggaaGCCGCGUUUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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