miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3507 5' -53.1 NC_001623.1 + 77487 0.66 0.957531
Target:  5'- -aCAGUAcGAaug-CGGCGUGAACGCg -3'
miRNA:   3'- cgGUCGUuCUggaaGCCGCGUUUGCG- -5'
3507 5' -53.1 NC_001623.1 + 87646 0.66 0.957531
Target:  5'- -gCGGCGuAGGCUgcgCGGaCGCuGGCGCg -3'
miRNA:   3'- cgGUCGU-UCUGGaa-GCC-GCGuUUGCG- -5'
3507 5' -53.1 NC_001623.1 + 14651 0.66 0.961251
Target:  5'- cGCCGGCAGG----UUGGCaaaCAAGCGCu -3'
miRNA:   3'- -CGGUCGUUCuggaAGCCGc--GUUUGCG- -5'
3507 5' -53.1 NC_001623.1 + 65797 0.66 0.96406
Target:  5'- cGCCAGCucGGCCauguaauugaauaugUUggcagacgcagauagCGGCGCcaaAAACGCa -3'
miRNA:   3'- -CGGUCGuuCUGG---------------AA---------------GCCGCG---UUUGCG- -5'
3507 5' -53.1 NC_001623.1 + 6397 0.66 0.967686
Target:  5'- uUCGcGCAcgauuguGGGCac-CGGCGCAGGCGCc -3'
miRNA:   3'- cGGU-CGU-------UCUGgaaGCCGCGUUUGCG- -5'
3507 5' -53.1 NC_001623.1 + 61617 0.66 0.968002
Target:  5'- uGUguGCAcGGAauguUCgcgUCGGUGCAAGCGUu -3'
miRNA:   3'- -CGguCGU-UCU----GGa--AGCCGCGUUUGCG- -5'
3507 5' -53.1 NC_001623.1 + 32027 0.66 0.968002
Target:  5'- --aGGCAGGAgCgUCGGCGUuAACGa -3'
miRNA:   3'- cggUCGUUCUgGaAGCCGCGuUUGCg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.