Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3507 | 5' | -53.1 | NC_001623.1 | + | 77487 | 0.66 | 0.957531 |
Target: 5'- -aCAGUAcGAaug-CGGCGUGAACGCg -3' miRNA: 3'- cgGUCGUuCUggaaGCCGCGUUUGCG- -5' |
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3507 | 5' | -53.1 | NC_001623.1 | + | 87646 | 0.66 | 0.957531 |
Target: 5'- -gCGGCGuAGGCUgcgCGGaCGCuGGCGCg -3' miRNA: 3'- cgGUCGU-UCUGGaa-GCC-GCGuUUGCG- -5' |
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3507 | 5' | -53.1 | NC_001623.1 | + | 14651 | 0.66 | 0.961251 |
Target: 5'- cGCCGGCAGG----UUGGCaaaCAAGCGCu -3' miRNA: 3'- -CGGUCGUUCuggaAGCCGc--GUUUGCG- -5' |
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3507 | 5' | -53.1 | NC_001623.1 | + | 65797 | 0.66 | 0.96406 |
Target: 5'- cGCCAGCucGGCCauguaauugaauaugUUggcagacgcagauagCGGCGCcaaAAACGCa -3' miRNA: 3'- -CGGUCGuuCUGG---------------AA---------------GCCGCG---UUUGCG- -5' |
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3507 | 5' | -53.1 | NC_001623.1 | + | 6397 | 0.66 | 0.967686 |
Target: 5'- uUCGcGCAcgauuguGGGCac-CGGCGCAGGCGCc -3' miRNA: 3'- cGGU-CGU-------UCUGgaaGCCGCGUUUGCG- -5' |
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3507 | 5' | -53.1 | NC_001623.1 | + | 61617 | 0.66 | 0.968002 |
Target: 5'- uGUguGCAcGGAauguUCgcgUCGGUGCAAGCGUu -3' miRNA: 3'- -CGguCGU-UCU----GGa--AGCCGCGUUUGCG- -5' |
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3507 | 5' | -53.1 | NC_001623.1 | + | 32027 | 0.66 | 0.968002 |
Target: 5'- --aGGCAGGAgCgUCGGCGUuAACGa -3' miRNA: 3'- cggUCGUUCUgGaAGCCGCGuUUGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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