miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3507 5' -53.1 NC_001623.1 + 18781 0.73 0.697057
Target:  5'- gGCCuGCGcuAUCUucuaUCGGCGUAAACGUg -3'
miRNA:   3'- -CGGuCGUucUGGA----AGCCGCGUUUGCG- -5'
3507 5' -53.1 NC_001623.1 + 125727 0.73 0.686679
Target:  5'- -aUAGcCAAGACgUUUGGCGCcuuAAGCGCa -3'
miRNA:   3'- cgGUC-GUUCUGgAAGCCGCG---UUUGCG- -5'
3507 5' -53.1 NC_001623.1 + 65716 0.73 0.676254
Target:  5'- gGCCGGCGAauuGACCgcgUUGGCgGCcGACGUu -3'
miRNA:   3'- -CGGUCGUU---CUGGa--AGCCG-CGuUUGCG- -5'
3507 5' -53.1 NC_001623.1 + 10524 0.73 0.66579
Target:  5'- cGUCuGCAuugaaccGAUCUUCGGCGgCGAugGCg -3'
miRNA:   3'- -CGGuCGUu------CUGGAAGCCGC-GUUugCG- -5'
3507 5' -53.1 NC_001623.1 + 94831 0.73 0.655297
Target:  5'- aGCCGaauuuuuuuGUAGGGCUcugcuuuaUUCGGCGCAGACGa -3'
miRNA:   3'- -CGGU---------CGUUCUGG--------AAGCCGCGUUUGCg -5'
3507 5' -53.1 NC_001623.1 + 78950 0.74 0.634263
Target:  5'- aCCAGCAAGAaacggcaGGCGCAGAUGUu -3'
miRNA:   3'- cGGUCGUUCUggaag--CCGCGUUUGCG- -5'
3507 5' -53.1 NC_001623.1 + 88360 1.15 0.001804
Target:  5'- cGCCAGCAAGACCUUCGGCGCAAACGCa -3'
miRNA:   3'- -CGGUCGUUCUGGAAGCCGCGUUUGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.