Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
351 | 5' | -57.9 | AC_000011.1 | + | 4795 | 0.66 | 0.418714 |
Target: 5'- -gGCCcAGCUCaUCUCCccCGCCC-Cg -3' miRNA: 3'- agCGGuUCGAGgAGAGGuuGCGGGaG- -5' |
|||||||
351 | 5' | -57.9 | AC_000011.1 | + | 26286 | 0.66 | 0.438254 |
Target: 5'- aCGCCgAGGCU-CUCUUCAacaaguacuGCGCgCUCa -3' miRNA: 3'- aGCGG-UUCGAgGAGAGGU---------UGCGgGAG- -5' |
|||||||
351 | 5' | -57.9 | AC_000011.1 | + | 27490 | 0.66 | 0.409145 |
Target: 5'- -aGaCCGAGCUCCagCUCCAGuguaaGCCC-Ca -3' miRNA: 3'- agC-GGUUCGAGGa-GAGGUUg----CGGGaG- -5' |
|||||||
351 | 5' | -57.9 | AC_000011.1 | + | 9953 | 0.66 | 0.448218 |
Target: 5'- cUCGCCGAGCgCgUCgucgCCGACcugGCgCUCg -3' miRNA: 3'- -AGCGGUUCGaGgAGa---GGUUG---CGgGAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home